Publications


  • Chen, Y., Banerjee, D., Mukhopadhyay, A., & Petzold, C. J. (2020). Systems and synthetic biology tools for advanced bioproduction hosts. Current Opinion in Biotechnology, 64, 101–109. https://doi.org/https://doi.org/10.1016/j.copbio.2019.12.007
    Wilken, S. E., Seppala, S., Lankiewicz, T. S., Saxena, M., Henske, J. K., Salamov, A. A., … O’Malley, M. A. (2020). Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. Metab Eng Commun, 10, e00107. https://doi.org/10.1016/j.mec.2019.e00107
    Eng, T., Sasaki, Y., Herbert, R. A., Lau, A., Trinh, J., Chen, Y., … Mukhopadhyay, A. (2020). Production of tetra-methylpyrazine using engineered Corynebacterium glutamicum. Metab Eng Commun, 10, e00115. https://doi.org/10.1016/j.mec.2019.e00115
    Incha, M. R., Thompson, M. G., Blake-Hedges, J. M., Liu, Y., Pearson, A. N., Schmidt, M., … Keasling, J. D. (2020). Leveraging host metabolism for bisdemethoxycurcumin production in Pseudomonas putida. Metab Eng Commun, 10, e00119. https://doi.org/10.1016/j.mec.2019.e00119
    Curran, S. C., Pereira, J. H., Baluyot, M. J., Lake, J., Puetz, H., Rosenburg, D. J., … Keasling, J. D. (2020). Structure and Function of BorB, the Type II Thioesterase from the Borrelidin Biosynthetic Gene Cluster. Biochemistry, 59(16), 1630–1639. https://doi.org/10.1021/acs.biochem.0c00126
    Lin, C. Y., & Eudes, A. (2020). Strategies for the production of biochemicals in bioenergy crops. Biotechnol Biofuels, 13(1), 71. https://doi.org/10.1186/s13068-020-01707-x
    van Munster, J. M., Daly, P., Blythe, M. J., Ibbett, R., Kokolski, M., Gaddipati, S., … Archer, D. B. (2020). Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose. Biotechnol Biofuels, 13(1), 69. https://doi.org/10.1186/s13068-020-01702-2
    Nies, S. C., Dinger, R., Chen, Y., Wordofa, G. G., Kristensen, M., Schneider, K., … Ebert, B. E. (2020). A systems analysis of NADH dehydrogenase mutants reveals flexibility and limits of Pseudomonas taiwanensis VLB120’s metabolism. Appl Environ Microbiol, AEM.03038-19. https://doi.org/10.1128/AEM.03038-19
    Yang, M., Baral, N. R., Simmons, B. A., Mortimer, J. C., Shih, P. M., & Scown, C. D. (2020). Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels. Proc Natl Acad Sci U S A, 202000053. https://doi.org/10.1073/pnas.2000053117
    Eiben, C. B., Tian, T., Thompson, M. G., Mendez-Perez, D., Kaplan, N., Goyal, G., … Keasling, J. D. (2020). Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol. ACS Synth Biol, 9(3), 468–474. https://doi.org/10.1021/acssynbio.9b00402
    Sitepu, I., Enriquez, L., Nguyen, V., Fry, R., Simmons, B., Singer, S., … Boundy-Mills, K. L. (2020). Ionic Liquid Tolerance of Yeasts in Family Dipodascaceae and Genus Wickerhamomyces. Appl Biochem Biotechnol. https://doi.org/10.1007/s12010-020-03293-y
    Park, M. R., Chen, Y., Thompson, M., Benites, V., Fong, B., Petzold, C., … Singer, S. W. (2020). The response of Pseudomonas putida to complex aromatic-rich fractions from biomass. ChemSusChem, n/a(n/a). https://doi.org/10.1002/cssc.202000268
    Belcher, M. S., Mahinthakumar, J., & Keasling, J. D. (2020). New frontiers: harnessing pivotal advances in microbial engineering for the biosynthesis of plant-derived terpenoids. Curr Opin Biotechnol, 65, 88–93. https://doi.org/10.1016/j.copbio.2020.02.001
    Dong, O. X., Yu, S., Jain, R., Zhang, N., Duong, P. Q., Butler, C., … Ronald, P. C. (2020). Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9. Nat Commun, 11(1), 1178. https://doi.org/10.1038/s41467-020-14981-y
    Jakociunas, T., Klitgaard, A. K., Kontou, E. E., Nielsen, J. B., Thomsen, E., Romero-Suarez, D., … Keasling, J. D. (2020). Programmable polyketide biosynthesis platform for production of aromatic compounds in yeast. Synth Syst Biotechnol, 5(1), 11–18. https://doi.org/10.1016/j.synbio.2020.01.004
    Brandon, A. G., & Scheller, H. V. (2020). Engineering of Bioenergy Crops: Dominant Genetic Approaches to Improve Polysaccharide Properties and Composition in Biomass. Front Plant Sci, 11(282), 282. https://doi.org/10.3389/fpls.2020.00282
    Sharma, R., Liang, Y., Lee, M. Y., Pidatala, V. R., Mortimer, J. C., & Scheller, H. V. (2020). Agrobacterium-mediated transient transformation of sorghum leaves for accelerating functional genomics and genome editing studies. BMC Res Notes, 13(1), 116. https://doi.org/10.1186/s13104-020-04968-9
    Huntington, T., Cui, X. G., Mishra, U., & Scown, C. D. (2020). Machine learning to predict biomass sorghum yields under future climate scenarios. Biofuels Bioproducts & Biorefining-Biofpr, n/a(n/a). https://doi.org/10.1002/bbb.2087
    Jacquet, N., Eudes, A., Dutta, T., Kim, K. H., Bouxin, F., Benites, V., … Richel, A. (2020). Influence of hydrocracking and ionic liquid pretreatments on composition and properties of Arabidopsis thaliana wild type and CAD mutant lignins. Renewable Energy. https://doi.org/10.1016/j.renene.2020.01.153
    Mnich, E., Bjarnholt, N., Eudes, A., Harholt, J., Holland, C., Jorgensen, B., … Ulvskov, P. (2020). Phenolic cross-links: building and de-constructing the plant cell wall. Nat Prod Rep. https://doi.org/10.1039/c9np00028c
    Thompson, M. G., Pearson, A. N., Barajas, J. F., Cruz-Morales, P., Sedaghatian, N., Costello, Z., … Keasling, J. D. (2020). Identification, Characterization, and Application of a Highly Sensitive Lactam Biosensor from Pseudomonas putida. ACS Synthetic Biology, 9(1), 53–62. https://doi.org/10.1021/acssynbio.9b00292
    Blake-Hedges, J. M., Pereira, J. H., Cruz-Morales, P., Thompson, M. G., Barajas, J. F., Chen, J., … Keasling, J. D. (2020). Structural Mechanism of Regioselectivity in an Unusual Bacterial Acyl-CoA Dehydrogenase. J Am Chem Soc, 142(2), 835–846. https://doi.org/10.1021/jacs.9b09187
    Hossain, A., Rahaman, M. S., Lee, D., Phung, T. K., Canlas, C. G., Simmons, B. A., … Sathitsuksanoh, N. (2020). Enhanced Softwood Cellulose Accessibility by H3PO4 Pretreatment: High Sugar Yield without Compromising Lignin Integrity. Industrial & Engineering Chemistry Research, 59(2), 1010–1024. https://doi.org/10.1021/acs.iecr.9b05873
    Barthel, S., Palluk, S., Hillson, J. N., Keasling, D. J., & Arlow, H. D. (2020). Enhancing Terminal Deoxynucleotidyl Transferase Activity on Substrates with 3′ Terminal Structures for Enzymatic De Novo DNA Synthesis. Genes, 11(1). https://doi.org/10.3390/genes11010102
    Thies, S., Joshi, D. R., Bruggeman, S. A., Clay, S. A., Mishra, U., Morile‐Miller, J., & Clay, D. E. (2020). Fertilizer timing affects nitrous oxide, carbon dioxide, and ammonia emissions from soil. Soil Science Society of America Journal, n/a(n/a). https://doi.org/10.1002/saj2.20010
    Novak, J. M., Watts, D. W., Bauer, P. J., Karlen, D. L., Hunt, P. G., & Mishra, U. (2020). Loamy sand soil approaches organic carbon saturation after 37 years of conservation tillage. Agronomy Journal, n/a(n/a). https://doi.org/10.1002/agj2.20184
    Ju, Z., Xiao, W., Yao, X., Tan, X., Simmons, B. A., Sale, K. L., & Sun, N. (2020). Theoretical study on the microscopic mechanism of lignin solubilization in Keggin-type polyoxometalate ionic liquids. Physical Chemistry Chemical Physics. https://doi.org/10.1039/C9CP05339E


  • Markel, K., Belcher, M. S., & Shih, P. M. (2019). Defining and engineering bioenergy plant feedstock ideotypes. Curr Opin Biotechnol, 62, 196–201. https://doi.org/10.1016/j.copbio.2019.11.014
    Baral, N. R., Neupane, P., Ale, B. B., Quiroz-Arita, C., Manandhar, S., & Bradley, T. H. (2019). Stochastic economic and environmental footprints of biodiesel production from Jatropha curcas Linnaeus in the different federal states of Nepal. Renewable and Sustainable Energy Reviews, 109619. https://doi.org/https://doi.org/10.1016/j.rser.2019.109619
    Thompson, M. G., Valencia, L. E., Blake-Hedges, J. M., Cruz-Morales, P., Velasquez, A. E., Pearson, A. N., … Keasling, J. D. (2019). Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer. Metab Eng Commun, 9, e00098. https://doi.org/10.1016/j.mec.2019.e00098
    Jain, R., Jenkins, J., Shu, S., Chern, M., Martin, J. A., Copetti, D., … Ronald, P. C. (2019). Genome sequence of the model rice variety KitaakeX. BMC Genomics, 20(1), 905. https://doi.org/10.1186/s12864-019-6262-4
    Rigual, V., Papa, G., Rodriguez, A., Wehrs, M., Kim, K. H., Oliet, M., … Singh, S. (2019). Evaluating protic ionic liquid for woody biomass one-pot pretreatment + saccharification, followed by Rhodosporidium toruloides cultivation. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.9b04451
    Doud, D. F. R., Bowers, R. M., Schulz, F., De Raad, M., Deng, K., Tarver, A., … Woyke, T. (2019). Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. ISME J. https://doi.org/10.1038/s41396-019-0557-y
    Breunig, H. M., Amirebrahimi, J., Smith, S., & Scown, C. D. (2019). Role of Digestate and Biochar in Carbon-Negative Bioenergy. Environ Sci Technol. https://doi.org/10.1021/acs.est.9b03763
    Eiben, C. B., de Rond, T., Bloszies, C., Gin, J., Chiniquy, J., Baidoo, E. E. K., … Keasling, J. D. (2019). Mevalonate Pathway Promiscuity Enables Noncanonical Terpene Production. ACS Synth Biol, 8(10), 2238–2247. https://doi.org/10.1021/acssynbio.9b00230
    Pierce, A., Zheng, Y., Wagner, W. L., Scheller, H. V., Mohnen, D., Tsuda, A., … Mentzer, S. J. (2019). Pectin biopolymer mechanics and microstructure associated with polysaccharide phase transitions. J Biomed Mater Res A, 0(0). https://doi.org/10.1002/jbm.a.36811
    Carrozza, C. F., Papa, G., Citterio, A., Sebastiano, R., Simmons, B. A., & Singh, S. (2019). One-pot bio-derived ionic liquid conversion followed by hydrogenolysis reaction for biomass valorization: a promising approach affecting the morphology and quality of lignin of switchgrass and poplar. Bioresource Technology, 122214. https://doi.org/10.1016/j.biortech.2019.122214
    Okekeogbu, I. O., Aryal, U. K., Fernandez-Nino, S. M. G., Penning, B. W., Heazlewood, J. L., McCann, M. C., & Carpita, N. C. (2019). Differential distributions of trafficking and signaling proteins of the maize ER-Golgi apparatus. Plant Signal Behav, 1672513. https://doi.org/10.1080/15592324.2019.1672513
    Thompson, M. G., Costello, Z., Hummel, N. F. C., Cruz-Morales, P., Blake-Hedges, J. M., Krishna, R. N., … Keasling, J. D. (2019). Robust Characterization of Two Distinct Glutarate Sensing Transcription Factors of Pseudomonas putida l-Lysine Metabolism. ACS Synth Biol. https://doi.org/10.1021/acssynbio.9b00255
    Lawson, C. E., Harcombe, W. R., Hatzenpichler, R., Lindemann, S. R., Löffler, F. E., O’Malley, M. A., … McMahon, K. D. (2019). Common principles and best practices for engineering microbiomes. Nature Reviews Microbiology. https://doi.org/10.1038/s41579-019-0255-9
    Langley, S., Eng, T., Wan, K. H., Herbert, R. A., Klein, A. P., Yoshikuni, Y., … Mukhopadhyay, A. (2019). Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots. Microbiol Resour Announc, 8(37), e00432-19. https://doi.org/10.1128/MRA.00432-19
    Rodrigues, A. V., Tantillo, D. J., Mukhopadhyay, A., Keasling, J. D., & Beller, H. (2019). Insights into the Mechanism of Phenylacetate Decarboxylase (PhdB), a Toluene-Producing Glycyl Radical Enzyme. Chembiochem, 0(ja). https://doi.org/10.1002/cbic.201900560
    Yoshida, S., Kim, S., Wafula, E. K., Tanskanen, J., Kim, Y. M., Honaas, L., … Shirasu, K. (2019). Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism. Curr Biol. https://doi.org/10.1016/j.cub.2019.07.086
    Kang, A., Mendez-Perez, D., Goh, E. B., Baidoo, E. E. K., Benites, V. T., Beller, H. R., … Lee, T. S. (2019). Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli. Metab Eng, 56, 85–96. https://doi.org/10.1016/j.ymben.2019.09.003
    Gilmore, S. P., Lankiewicz, T. S., Wilken, S. E., Brown, J. L., Sexton, J. A., Henske, J. K., … O’Malley, M. A. (2019). Top-Down Enrichment Guides in Formation of Synthetic Microbial Consortia for Biomass Degradation. ACS Synth Biol. https://doi.org/10.1021/acssynbio.9b00271
    DeRose, K., Liu, F., Davis, R. W., Simmons, B. A., & Quinn, J. C. (2019). Conversion of Distiller’s Grains to Renewable Fuels and High Value Protein: Integrated Techno-Economic and Life Cycle Assessment. Environ Sci Technol, 53(17), 10525–10533. https://doi.org/10.1021/acs.est.9b03273
    Sitepu, I. R., Enriquez, L. L., Nguyen, V., Doyle, C., Simmons, B. A., Singer, S. W., … Boundy-Mills, K. (2019). Ethanol production in switchgrass hydrolysate by ionic liquid-tolerant yeasts. Bioresource Technology Reports, 7, 100275. https://doi.org/10.1016/j.biteb.2019.100275
    Chen, Y., Guenther, J. M., Gin, J. W., Chan, L. J. G., Costello, Z., Ogorzalek, T. L., … Petzold, C. J. (2019). Automated “Cells-To-Peptides” Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes. J Proteome Res. https://doi.org/10.1021/acs.jproteome.9b00455
    Brenac, L., Baidoo, E. E. K., Keasling, J. D., & Budin, I. (2019). Distinct functional roles for hopanoid composition in the chemical tolerance of Zymomonas mobilis. Mol Microbiol, 0(0). https://doi.org/10.1111/mmi.14380
    Baral, N. R., Kavvada, O., Mendez Perez, D., Mukhopadhyay, A., Lee, T. S., Simmons, B. A., & Scown, C. D. (2019). Greenhouse Gas Footprint, Water-Intensity, and Production Cost of Bio-Based Isopentenol as a Renewable Transportation Fuel. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.9b02928
    Chiniquy, D., Underwood, W., Corwin, J., Ryan, A., Szemenyei, H., Lim, C. C., … Somerville, S. (2019). PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens. Plant J, 0(ja). https://doi.org/10.1111/tpj.14497
    Sandberg, T. E., Salazar, M. J., Weng, L. L., Palsson, B. O., & Feist, A. M. (2019). The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology. Metab Eng, 56, 1–16. https://doi.org/10.1016/j.ymben.2019.08.004
    Carbonell, P., Radivojevic, T., & Garcia Martin, H. (2019). Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation. ACS Synth Biol, 8(7), 1474–1477. https://doi.org/10.1021/acssynbio.8b00540
    Jiang, L., Li, G., Chern, M., Jain, R., Pham, N. T., Martin, J. A., … Ronald, P. C. (2019). Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1. Rice (N Y), 12(1), 52. https://doi.org/10.1186/s12284-019-0308-8
    Gupta, S., Merriman, C., Petzold, C. J., Ralston, C., & Fu, D. (2019). Water molecules mediate zinc mobility in the bacterial zinc diffusion channel ZIPB. J Biol Chem. https://doi.org/10.1074/jbc.RA119.009239
    Yan, J., Liang, L., He, Q., Xu, F., Sun, J., Goh, E. B., … Sun, N. (2019). Methyl Ketone Production from Municipal Solid Waste/ Biomass Blends by One-pot Ionic Liquid Pretreatment, Enzymatic Saccharification, and Escherichia coli Fermentation. ChemSusChem, 0(ja). https://doi.org/10.1002/cssc.201901084
    Roell, G. W., Carr, R. R., Campbell, T., Shang, Z., Henson, W. R., Czajka, J. J., … Tang, Y. J. (2019). A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630. Metab Eng, 55, 120–130. https://doi.org/10.1016/j.ymben.2019.06.013
    Parsons, H. T., Stevens, T. J., McFarlane, H. E., Vidal-Melgosa, S., Griss, J., Lawrence, N., … Lilley, K. S. (2019). Separating Golgi proteins from cis to trans reveals underlying properties of cisternal localization. Plant Cell, tpc.00081.2019. https://doi.org/10.1105/tpc.19.00081
    Yan, J., Huang, Y., He, H., Han, T., Di, P., Sechet, J., … Zhang, A. (2019). Xyloglucan Endotransglucosylase-Hydrolase30 negatively affects salt tolerance in Arabidopsis. J Exp Bot. https://doi.org/10.1093/jxb/erz311
    Nora, L. C., Wehrs, M., Kim, J., Cheng, J. F., Tarver, A., Simmons, B. A., … Kirby, J. (2019). A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides. Microb Cell Fact, 18(1), 117. https://doi.org/10.1186/s12934-019-1167-0
    Bouchez, P., Teixeira Benites, V., Baidoo, E. E. K., Mortimer, J. C., Sullivan, M. L., Scheller, H. V., & Eudes, A. (2019). Production of clovamide and its analogs in Saccharomyces cerevisiae and Lactococcus lactis. Lett Appl Microbiol, 0(ja). https://doi.org/10.1111/lam.13190
    Shih, P. M. (2019). Early Cyanobacteria and the Innovation of Microbial Sunscreens. MBio, 10(3), e01262-19. https://doi.org/10.1128/mBio.01262-19
    Wang, S., Cheng, G., Dong, J., Tian, T., Lee, T. S., Mukhopadhyay, A., … Singer, S. W. (2019). NaCl enhances Escherichia coli growth and isoprenol production in the presence of imidazolium-based ionic liquids. Bioresource Technology Reports, 6, 1–5. https://doi.org/10.1016/j.biteb.2019.01.021
    Yan, D., Yadav, S. R., Paterlini, A., Nicolas, W. J., Petit, J. D., Brocard, L., … Helariutta, Y. (2019). Sphingolipid biosynthesis modulates plasmodesmal ultrastructure and phloem unloading. Nat Plants, 5(6), 604–615. https://doi.org/10.1038/s41477-019-0429-5
    de Rond, T., Gao, J., Zargar, A., de Raad, M., Cunha, J., Northen, T. R., & Keasling, J. D. (2019). A high-throughput mass spectrometric enzyme activity assay enabling the discovery of cytochrome P450 biocatalysts. Angew Chem Int Ed Engl, 0(ja). https://doi.org/10.1002/anie.201901782
    Opgenorth, P., Costello, Z., Okada, T., Goyal, G., Chen, Y., Gin, J., … Beller, H. R. (2019). Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning. ACS Synth Biol. https://doi.org/10.1021/acssynbio.9b00020
    Liang, Y., Eudes, A., Yogiswara, S., Jing, B., Benites, V. T., Yamanaka, R., … Loque, D. (2019). A screening method to identify efficient sgRNAs in Arabidopsis, used in conjunction with cell-specific lignin reduction. Biotechnol Biofuels, 12(1), 130. https://doi.org/10.1186/s13068-019-1467-y
    Barajas, J. F., McAndrew, R. P., Thompson, M. G., Backman, T. W. H., Pang, B., de Rond, T., … Keasling, J. D. (2019). Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases. J Ind Microbiol Biotechnol. https://doi.org/10.1007/s10295-019-02189-z
    Herbert, R. A., Eng, T., Martinez, U., Wang, B., Langley, S., Wan, K., … Mortimer, J. C. (2019). Rhizobacteria mediate the phytotoxicity of a range of biorefinery-relevant compounds. Environ Toxicol Chem, 0(ja). https://doi.org/10.1002/etc.4501
    Thompson, M. G., Blake-Hedges, J. M., Cruz-Morales, P., Barajas, J. F., Curran, S. C., Eiben, C. B., … Keasling, J. D. (2019). Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism. MBio, 10(3), e02577-18. https://doi.org/10.1128/mBio.02577-18
    Liu, C.-J., Zhao, Y., & Zhang, K. (2019). Cytokinin Transporters: Multisite Players in Cytokinin Homeostasis and Signal Distribution. Frontiers in Plant Science, 10(693). https://doi.org/10.3389/fpls.2019.00693
    Lis, A. V., Schneider, K., Weber, J., Keasling, J. D., Jensen, M. K., & Klein, T. (2019). Exploring small-scale chemostats to scale up microbial processes: 3-hydroxypropionic acid production in S. cerevisiae. Microbial Cell Factories, 18(1), 50. https://doi.org/10.1186/s12934-019-1101-5
    Roth, M. S., Gallaher, S. D., Westcott, D. J., Iwai, M., Louie, K. B., Mueller, M., … Niyogi, K. K. (2019). Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell, 31(3), 579–601. https://doi.org/10.1105/tpc.18.00742
    Sasaki, Y., Eng, T., Herbert, R. A., Trinh, J., Chen, Y., Rodriguez, A., … Mukhopadhyay, A. (2019). Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates. Biotechnol Biofuels, 12(1), 41. https://doi.org/10.1186/s13068-019-1381-3
    Wehrs, M., Tanjore, D., Eng, T., Lievense, J., Pray, T. R., & Mukhopadhyay, A. (2019). Engineering Robust Production Microbes for Large-Scale Cultivation. Trends Microbiol. https://doi.org/10.1016/j.tim.2019.01.006
    Stonebloom, S. H., & Scheller, H. V. (2019). Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray). BMC Plant Biol, 19(1), 71. https://doi.org/10.1186/s12870-019-1669-2
    Lakusta, A. M., Kwon, M., Kwon, E. G., Stonebloom, S., Scheller, H. V., & Ro, D. K. (2019). Molecular Studies of the Protein Complexes Involving Cis-Prenyltransferase in Guayule (Parthenium argentatum), an Alternative Rubber-Producing Plant. Front Plant Sci, 10(165), 165. https://doi.org/10.3389/fpls.2019.00165


  • Meadows, C. W., Mingardon, F., Garabedian, B. M., Baidoo, E. E. K., Benites, V. T., Rodrigues, A. V., … Lee, T. S. (2018). Discovery of novel geranylgeranyl reductases and characterization of their substrate promiscuity. Biotechnology for Biofuels, 11(1), 340. https://doi.org/10.1186/s13068-018-1342-2
    Wehrs, M., Prahl, J. P., Moon, J., Li, Y., Tanjore, D., Keasling, J. D., … Mukhopadhyay, A. (2018). Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae. Microb Cell Fact, 17(1), 193. https://doi.org/10.1186/s12934-018-1045-1
    Pomraning, K. R., Bredeweg, E. L., Kerkhoven, E. J., Barry, K., Haridas, S., Hundley, H., … Baker, S. E. (2018). Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica. MSphere, 3(6), e00541-18. https://doi.org/10.1128/mSphere.00541-18
    Wang, S., Cheng, G., Dong, J., Tian, T., Lee, T. S., Mukhopadhyay, A., … Singer, S. W. (2018). Tolerance Characterization and Isoprenol Production of Adapted Escherichia coli in the Presence of Ionic Liquids. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.8b05144
    Baral, N. R., Quiroz-Arita, C., & Bradley, T. H. (2018). Probabilistic Lifecycle Assessment of Butanol Production from Corn Stover Using Different Pretreatment Methods. Environ Sci Technol. https://doi.org/10.1021/acs.est.8b05176
    Morton, S. A., Gupta, S., Petzold, C. J., & Ralston, C. (2018). Recent Advances in X-Ray Hydroxl Radical Footprinting at the Advanced Light Source Synchrotron. Protein Pept Lett, 26, 1–1. https://doi.org/10.2174/0929866526666181128125725
    Satchwell, A. J., Scown, C. D., Smith, S. J., Amirebrahimi, J., Jin, L., Kirchstetter, T. W., … Preble, C. V. (2018). Accelerating the Deployment of Anaerobic Digestion to Meet Zero Waste Goals. Environ Sci Technol, 52(23), 13663–13669. https://doi.org/10.1021/acs.est.8b04481
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