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    Baker, S. E., Schackwitz, W., Lipzen, A., Martin, J., Haridas, S., LaButti, K., Grigoriev, I. V., Simmons, B. A., & McCluskey, K. (2015). “Draft Genome Sequence of Neurospora crassa Strain FGSC 73”. Genome Announc, 3(2). doi, 10.1128/genomeA.00074-15

    Barajas, J. F., Phelan, R. M., Schaub, A. J., Kliewer, J. T., Kelly, P. J., Jackson, D. R., Luo, R., Keasling, J. D., & Tsai, S. C. (2015). “Comprehensive Structural and Biochemical Analysis of the Terminal Myxalamid Reductase Domain for the Engineered Production of Primary Alcohols”. Chem Biol, 22(8), 1018-1029. doi, 10.1016/j.chembiol.2015.06.022

    Beller, H. R., Lee, T. S., & Katz, L. (2015). “Natural products as biofuels and bio-based chemicals: fatty acids and isoprenoids”. Nat Prod Rep. doi, 10.1039/c5np00068h

    Cheng, G., Zhang, X., Simmons, B., & Singh, S. (2015). “Theory, practice and prospects of X- ray and neutron scattering for lignocellulosic biomass characterization: towards understanding biomass pretreatment”. [10.1039/C4EE03147D]. Energy & Environmental Science, 8(2), 436-455. doi, DOI 10.1039/c4ee03147d

    Chiu, T. Y., Lao, J., Manalansan, B., Loque, D., Roux, S. J., & Heazlewood, J. L. (2015). “Biochemical characterization of Arabidopsis APYRASE family reveals their roles in regulating endomembrane NDP/NMP homeostasis”. Biochem J. doi, 10.1042/bj20150235

    Chubukov, V., Mingardon, F., Schackwitz, W., Baidoo, E. E., Alonso-Gutierrez, J., Hu, Q., Lee, T. S., Keasling, J. D., & Mukhopadhyay, A. (2015). “Acute limonene toxicity in Escherichia coli is caused by limonene-hydroperoxide and alleviated by a point mutation in alkyl hydroperoxidase (AhpC)”. Appl Environ Microbiol, 81(14), 4690-4696. doi, 10.1128/AEM.01102-15

    Dolan, J. A., Sathitsuksanoh, N., Rodriguez, K., Simmons, B. A., Frazier, C. E., & Renneckar, S. (2015). “Biocomposite adhesion without added resin: understanding the chemistry of the direct conversion of wood into adhesives”. RSC Adv., 5(82), 67267-67276. doi, 10.1039/c5ra09676f

    Ebert, B., Rautengarten, C., Guo, X., Xiong, G., Stonebloom, S., Smith-Moritz, A. M., Herter, T., Chan, L. J., Adams, P. D., Petzold, C. J., Pauly, M., Willats, W. G., Heazlewood, J. L., & Scheller, H. V. (2015). “Identification and Characterization of a Golgi-Localized UDP-Xylose Transporter Family from Arabidopsis”. Plant Cell, 27(4), 1218-1227. doi, 10.1105/tpc.114.133827

    Eudes, A., Sathitsuksanoh, N., Baidoo, E. E., George, A., Liang, Y., Yang, F., Singh, S., Keasling, J. D., Simmons, B. A., & Loque, D. (2015). “Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency”. Plant Biotechnol J. doi, 10.1111/pbi.12310

    Foo, J. L., Jensen, H. M., Dahl, R. H., George, K., Keasling, J. D., Lee, T. S., Leong, S., & Mukhopadhyay, A. (2014). “Improving microbial biogasoline production in Escherichia coli using tolerance engineering”. [Article]. MBio, 5(6), e01932. doi, 10.1128/mBio.01932-14

    Ford, K. L., Zeng, W., Heazlewood, J. L., & Bacic, A. (2015). “Characterization of protein N-glycosylation by tandem mass spectrometry using complementary fragmentation techniques”. Front Plant Sci, 6, 674. doi, 10.3389/fpls.2015.00674

    Furtado, A., Lupoi, J. S., Hoang, N. V., Healey, A., Singh, S., Simmons, B. A., & Henry, R. J. (2014). “Modifying plants for biofuel and biomaterial production”. Plant Biotechnol J, 12(9), 1246-1258. doi, 10.1111/pbi.12300

    Garcia Martin, H., Kumar, V. S., Weaver, D., Ghosh, A., Chubukov, V., Mukhopadhyay, A., Arkin, A., & Keasling, J. D. (2015). “A Method to Constrain Genome-Scale Models with 13C Labeling Data”. PLoS Comput Biol, 11(9), e1004363. doi, 10.1371/journal.pcbi.1004363

    Gardner, J. L., He, W., Li, C. L., Wong, J., Sale, K. L., Simmons, B. A., Singh, S., & Tanjore, D. (2015). “Calorimetric evaluation indicates that lignin conversion to advanced biofuels is vital to improving energy yields”. [10.1039/C5RA01503K]. Rsc Advances, 5(63), 51092-51101. doi, 10.1039/c5ra01503k

    George, A., Brandt, A., Tran, K., Zahari, S. M. S. N. S., Klein-Marcuschamer, D., Sun, N., Sathitsuksanoh, N., Shi, J., Stavila, V., Parthasarathi, R., Singh, S., Holmes, B. M., Welton, T., Simmons, B. A., & Hallett, J. P. (2014). “Design of low-cost ionic liquids for lignocellulosic biomass pretreatment”. [ ]. Green Chem., 17(3), 1728-1734. doi, 10.1039/c4gc01208a

    George, K. W., Alonso-Gutierrez, J., Keasling, J. D., & Lee, T. S. (2015). Isoprenoid Drugs, Biofuels, and Chemicals-Artemisinin, Farnesene, and Beyond Adv Biochem Eng Biotechnol (2015 Jan 11 ed.): Springer Berlin Heidelberg.

    George, K. W., Thompson, M. G., Kang, A., Baidoo, E., Wang, G., Chan, L. J., Adams, P. D., Petzold, C. J., Keasling, J. D., & Lee, T. (2015). “Metabolic engineering for the high-yield production of isoprenoid-based C5 alcohols in E. coli”. Sci Rep, 5, 11128. doi, 10.1038/srep11128

    Gondolf, V. M., Stoppel, R., Ebert, B., Rautengarten, C., Liwanag, A. J., Loque, D., & Scheller, H. V. (2014). “A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis”. [Research Support, Non-U.S. Gov’t]. BMC Plant Biol, 14(1), 344. doi, 10.1186/s12870-014-0344-x

    González Fernández-Niño, S. M., Smith-Moritz, A. M., Chan, L. J. G., Adams, P. D., Heazlewood, J. L., & Petzold, C. J. (2015). “Standard flow liquid chromatography for shotgun proteomics in bioenergy research”. [Original Research]. Frontiers in Bioengineering and Biotechnology, 3. doi, 10.3389/fbioe.2015.00044

    Gonzalez, T. L., Liang, Y., Nguyen, B. N., Staskawicz, B. J., Loque, D., & Hammond, M. C. (2015). “Tight regulation of plant immune responses by combining promoter and suicide exon elements”. Nucleic Acids Res, 43(14), 7152-7161. doi, 10.1093/nar/gkv655

    Gupta, S., Guttman, M., Leverenz, R. L., Zhumadilova, K., Pawlowski, E. G., Petzold, C. J., Lee, K. K., Ralston, C. Y., & Kerfeld, C. A. (2015). “Local and global structural drivers for the photoactivation of the orange carotenoid protein”. Proc Natl Acad Sci U S A. doi, 10.1073/pnas.1512240112

    Haushalter, R. W., Groff, D., Deutsch, S., The, L., Chavkin, T. A., Brunner, S. F., Katz, L., & Keasling, J. D. (2015). “Development of an orthogonal fatty acid biosynthesis system in E. coli for oleochemical production”. Metab Eng, 30, 1-6. doi, 10.1016/j.ymben.2015.04.003

    Hiras, J., Wu, Y.-W., Eichorst, S. A., Simmons, B. A., & Singer, S. W. (2015). “Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage”. [Original Article]. ISME J. doi, 10.1038/ismej.2015.158

    Johnson, R. E., de Rond, T., Lindsay, V. N., Keasling, J. D., & Sarpong, R. (2015). “Synthesis of Cycloprodigiosin Identifies the Natural Isolate as a Scalemic Mixture”. Org Lett, 17(14), 3474-3477. doi, 10.1021/acs.orglett.5b01527

    Jung, K. H., Cao, P., Sharma, R., Jain, R., & Ronald, P. C. (2015). “Phylogenomics databases for facilitating functional genomics in rice”. Rice (N Y), 8(1), 60. doi, 10.1186/s12284-015-0060-7

    Kent, M. S., Avina, I. C., Rader, N., Busse, M. L., George, A., Sathitsuksanoh, N., Baidoo, E., Timlin, J., Giron, N. H., Celina, M. C., Martin, L. E., Polsky, R., Chavez, V. H., Huber, D. L., Keasling, J. D., Singh, S., Simmons, B. A., & Sale, K. L. (2015). “Assay for lignin breakdown based on lignin films: insights into the Fenton reaction with insoluble lignin”. [10.1039/C5GC01083G]. Green Chem. doi, 10.1039/c5gc01083g

    Kirby, J., Nishimoto, M., Chow, R. W., Baidoo, E. E., Wang, G., Martin, J., Schackwitz, W., Chan, R., Fortman, J. L., & Keasling, J. D. (2015). “Enhancing Terpene yield from sugars via novel routes to 1-deoxy-d-xylulose 5-phosphate”. [Journal article]. Appl Environ Microbiol, 81(1), 130-138. doi, 10.1128/AEM.02920-14

    Klein-Marcuschamer, D., & Blanch, H. W. (2015). “Renewable fuels from biomass: Technical hurdles and economic assessment of biological routes”. Aiche Journal, 61(9), 2689-2701. doi, 10.1002/aic.14755 <Go to ISI>://WOS:000359311100003

    Konda, N. V. S. N. M., Singh, S., Simmons, B. A., & Klein-Marcuschamer, D. (2015). “An Investigation on the Economic Feasibility of Macroalgae as a Potential Feedstock for Biorefineries”. BioEnergy Research. doi, 10.1007/s12155-015-9594-1

    Lao, J., Sharma, M., Sharma, R., Fernandez-Nino, S. M., Schmutz, J., Ronald, P. C., Heazlewood, J. L., & Schwessinger, B. (2015). “Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum)”. Proteomics, 15(13), 2286-2290. doi, 10.1002/pmic.201400487

    Lee, T., Oh, T., Yang, S., Shin, J., Hwang, S., Kim, C. Y., Kim, H., Shim, H., Shim, J. E., Ronald, P. C., & Lee, I. (2015). “RiceNet v2: an improved network prioritization server for rice genes”. Nucleic Acids Res, 43(W1), W122-127. doi, 10.1093/nar/gkv253

    Leverenz, R. L., Sutter, M., Wilson, A., Gupta, S., Thurotte, A., Bourcier de Carbon, C., Petzold, C. J., Ralston, C., Perreau, F., Kirilovsky, D., & Kerfeld, C. A. (2015). “PHOTOSYNTHESIS. A 12 A carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection”. Science, 348(6242), 1463-1466. doi, 10.1126/science.aaa7234

    Li, C., Tanjore, D., He, W., Wong, J., Gardner, J. L., Thompson, V. S., Yancey, N. A., Sale, K. L., Simmons, B. A., & Singh, S. (2015). “Scale-Up of Ionic Liquid-Based Fractionation of Single and Mixed Feedstocks”. BioEnergy Research, 1-10. doi, 10.1007/s12155-015-9587-0

    Loque, D., Scheller, H. V., & Pauly, M. (2015). “Engineering of plant cell walls for enhanced biofuel production”. Curr Opin Plant Biol, 25, 151-161. doi, 10.1016/j.pbi.2015.05.018

    Lund, C. H., Bromley, J. R., Stenbaek, A., Rasmussen, R. E., Scheller, H. V., & Sakuragi, Y. (2015). “A reversible Renilla luciferase protein complementation assay for rapid identification of protein-protein interactions reveals the existence of an interaction network involved in xyloglucan biosynthesis in the plant Golgi apparatus”. [Journal article]. J Exp Bot, 66(1), 85-97. doi, 10.1093/jxb/eru401

    Lupoi, J. S., Healey, A., Singh, S., Sykes, R., Davis, M., Lee, D. J., Shepherd, M., Simmons, B. A., & Henry, R. J. (2015). “High-Throughput Prediction of Acacia and Eucalypt Lignin Syringyl/Guaiacyl Content Using FT-Raman Spectroscopy and Partial Least Squares Modeling”. BioEnergy Research. doi, 10.1007/s12155-015-9578-1

    Lupoi, J. S., Singh, S., Parthasarathi, R., Simmons, B. A., & Henry, R. J. (2015). “Recent innovations in analytical methods for the qualitative and quantitative assessment of lignin”. Renewable & Sustainable Energy Reviews, 49, 871-906. doi, 10.1016/j.rser.2015.04.091

    Lupoi, J. S., Smith-Moritz, A., Singh, S., McQualter, R., Scheller, H. V., Simmons, B. A., & Henry, R. J. (2015). “Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging”. Biotechnol Biofuels, 8, 98. doi, 10.1186/s13068-015-0279-y

    McAndrew, R., Pruitt, R. N., Kamita, S. G., Pereira, J. H., Majumdar, D., Hammock, B. D., Adams, P. D., & Ronald, P. C. (2014). “Structure of the OsSERK2 leucine-rich repeat extracellular domain”. Acta Crystallogr D Biol Crystallogr, 70(Pt 11), 3080-3086. doi, 10.1107/S1399004714021178

    Mingardon, F., Clement, C., Hirano, K., Nhan, M., Luning, E. G., Chanal, A., & Mukhopadhyay, A. (2015). “Improving olefin tolerance and production in E. coli using native and evolved AcrB”. Biotechnol Bioeng, 112(5), 879-888. doi, 10.1002/bit.25511

    Mortimer, J. C., Faria-Blanc, N., Yu, X., Tryfona, T., Sorieul, M., Ng, Y. Z., Zhang, Z., Stott, K., Anders, N., & Dupree, P. (2015). “An unusual xylan in Arabidopsis primary cell walls is synthesised by GUX3, IRX9L, IRX10L and IRX14”. Plant J, 83(3), 413-426. doi, 10.1111/tpj.12898

    Mukhopadhyay, A. (2015). “Tolerance engineering in bacteria for the production of advanced biofuels and chemicals”. Trends Microbiol, 23(8), 498-508. doi, 10.1016/j.tim.2015.04.008

    Nafisi, M., Stranne, M., Fimognari, L., Atwell, S., Martens, H. J., Pedas, P. R., Hansen, S. F., Nawrath, C., Scheller, H. V., Kliebenstein, D. J., & Sakuragi, Y. (2015). “Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses”. [Original Research]. Front Plant Sci, 6, 550. doi, 10.3389/fpls.2015.00550

    Papa, G., Rodriguez, S., George, A., Schievano, A., Orzi, V., Sale, K. L., Singh, S., Adani, F., & Simmons, B. A. (2015). “Comparison of different pretreatments for the production of bioethanol and biomethane from corn stover and switchgrass”. Bioresour Technol, 183C(0), 101-110. doi, 10.1016/j.biortech.2015.01.121

    Parsons, H. T., & Heazlewood, J. L. (2015). “Beyond the Western front: targeted proteomics and organelle abundance profiling”. Front Plant Sci, 6, 301. doi, 10.3389/fpls.2015.00301

    Parthasarathi, R., Balamurugan, K., Shi, J., Subramanian, V., Simmons, B. A., & Singh, S. (2015). “Theoretical Insights into the Role of Water in the Dissolution of Cellulose using IL/Water Mixed Solvent Systems”. J Phys Chem B. doi, 10.1021/acs.jpcb.5b02680

    Patron, N. J., Orzaez, D., Marillonnet, S., Warzecha, H., Matthewman, C., Youles, M., Raitskin, O., Leveau, A., Farre, G., Rogers, C., Smith, A., Hibberd, J., Webb, A. A., Locke, J., Schornack, S., Ajioka, J., Baulcombe, D. C., Zipfel, C., Kamoun, S., Jones, J. D., Kuhn, H., Robatzek, S., Van Esse, H. P., Sanders, D., Oldroyd, G., Martin, C., Field, R., O’Connor, S., Fox, S., Wulff, B., Miller, B., Breakspear, A., Radhakrishnan, G., Delaux, P. M., Loque, D., Granell, A., Tissier, A., Shih, P., Brutnell, T. P., Quick, W. P., Rischer, H., Fraser, P. D., Aharoni, A., Raines, C., South, P. F., Ane, J. M., Hamberger, B. R., Langdale, J., Stougaard, J., Bouwmeester, H., Udvardi, M., Murray, J. A., Ntoukakis, V., Schafer, P., Denby, K., Edwards, K. J., Osbourn, A., & Haseloff, J. (2015). “Standards for plant synthetic biology: a common syntax for exchange of DNA parts”. New Phytol. doi, 10.1111/nph.13532

    Perez-Pimienta, J. A., Lopez-Ortega, M. G., Chavez-Carvayar, J. A., Varanasi, P., Stavila, V., Cheng, G., Singh, S., & Simmons, B. A. (2015). “Characterization of agave bagasse as a function of ionic liquid pretreatment”. Biomass and Bioenergy, 75, 180-188. doi, 10.1016/j.biombioe.2015.02.026

    Poust, S., Hagen, A., Katz, L., & Keasling, J. D. (2014). “Narrowing the gap between the promise and reality of polyketide synthases as a synthetic biology platform”. Curr Opin Biotechnol, 30(0), 32-39. doi, 10.1016/j.copbio.2014.04.011

    Poust, S., Phelan, R. M., Deng, K., Katz, L., Petzold, C. J., & Keasling, J. D. (2015). “Divergent Mechanistic Routes for the Formation of gem-Dimethyl Groups in the Biosynthesis of Complex Polyketides”. [Article]. Angew Chem Int Ed Engl, 54(8), 2370-2373. doi, 10.1002/anie.201410124

    Poust, S., Piety, J., Bar-Even, A., Louw, C., Baker, D., Keasling, J. D., & Siegel, J. B. (2015). “Mechanistic Analysis of an Engineered Enzyme that Catalyzes the Formose Reaction”. Chembiochem. doi, 10.1002/cbic.201500228

    Rhee, M., Light, Y. K., Yilmaz, S., Adams, P. D., Saxena, D., Meagher, R. J., & Singh, A. K. (2014). “Pressure stabilizer for reproducible picoinjection in droplet microfluidic systems”. [Article]. Lab Chip, 14(23), 4533-4539. doi, 10.1039/c4lc00823e

    Sathitsuksanoh, N., Sawant, M., Truong, Q., Tan, J., Canlas, C. G., Sun, N., Zhang, W., Renneckar, S., Prasomsri, T., Shi, J., Çetinkol, Ö., Singh, S., Simmons, B. A., & George, A. (2015). “How Alkyl Chain Length of Alcohols Affects Lignin Fractionation and Ionic Liquid Recycle During Lignocellulose Pretreatment”. BioEnergy Research, 1-9. doi, 10.1007/s12155-015-9643-9

    Schicklberger, M., Shapiro, N., Loque, D., Woyke, T., & Chakraborty, R. (2015). “Draft Genome Sequence of Raoultella terrigena R1Gly, a Diazotrophic Endophyte”. Genome Announc, 3(3). doi, 10.1128/genomeA.00607-15

    Schwessinger, B., Bahar, O., Thomas, N., Holton, N., Nekrasov, V., Ruan, D., Canlas, P. E., Daudi, A., Petzold, C. J., Singan, V. R., Kuo, R., Chovatia, M., Daum, C., Heazlewood, J. L., Zipfel, C., & Ronald, P. C. (2015). “Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses”. PLoS Pathog, 11(3), e1004809. doi, 10.1371/journal.ppat.1004809

    Scullin, C., Cruz, A. G., Chuang, Y. D., Simmons, B. A., Loque, D., & Singh, S. (2015). “Restricting lignin and enhancing sugar deposition in secondary cell walls enhances monomeric sugar release after low temperature ionic liquid pretreatment”. Biotechnol Biofuels, 8, 95. doi, 10.1186/s13068-015-0275-2

    Sharma, M. K., Sharma, R., Cao, P., Harkenrider, M., Jenkins, J., Grimwood, J., Zhang, J., Udvardi, M. K., Schmutz, J., & Ronald, P. C. (2015). “Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes”. BioEnergy Research, 1-14. doi, 10.1007/s12155-015-9667-1

    Shi, J., George, K. W., Sun, N., He, W., Li, C., Stavila, V., Keasling, J. D., Simmons, B. A., Lee, T. S., & Singh, S. (2015). “Impact of Pretreatment Technologies on Saccharification and Isopentenol Fermentation of Mixed Lignocellulosic Feedstocks”. BioEnergy Research, 1-10. doi, 10.1007/s12155-015-9588-z

    Shih, S. C., Gach, P. C., Sustarich, J., Simmons, B. A., Adams, P. D., Singh, S., & Singh, A. K. (2015). “A droplet-to-digital (D2D) microfluidic device for single cell assays”. [10.1039/C4LC00794H]. Lab Chip, 15(1), 225-236. doi, 10.1039/c4lc00794h

    Shih, S. C., Goyal, G., Kim, P. W., Koutsoubelis, N., Keasling, J. D., Adams, P. D., Hillson, N. J., & Singh, A. K. (2015). “A Versatile Microfluidic Device for Automating Synthetic Biology”. ACS Synth Biol. doi, 10.1021/acssynbio.5b00062

    Siegel, J. B., Smith, A. L., Poust, S., Wargacki, A. J., Bar-Even, A., Louw, C., Shen, B. W., Eiben, C. B., Tran, H. M., Noor, E., Gallaher, J. L., Bale, J., Yoshikuni, Y., Gelb, M. H., Keasling, J. D., Stoddard, B. L., Lidstrom, M. E., & Baker, D. (2015). “Computational protein design enables a novel one-carbon assimilation pathway”. Proc Natl Acad Sci U S A, 112(12), 3704-3709. doi, 10.1073/pnas.1500545112

    Simmons, C. W., Reddy, A. P., D’Haeseleer, P., Khudyakov, J., Billis, K., Pati, A., Simmons, B. A., Singer, S. W., Thelen, M. P., & VanderGheynst, J. S. (2014). “Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw”. Biotechnol Biofuels, 7(1), 495. doi, 10.1186/s13068-014-0180-0

    Singh, S., Cheng, G., Sathitsuksanoh, N., Wu, D., Varanasi, P., George, A., Balan, V., Gao, X., Kumar, R., Dale, B. E., Wyman, C. E., & Simmons, B. A. (2015). “Comparison of Different Biomass Pretreatment Techniques and Their Impact on Chemistry and Structure”. [Original Research]. Frontiers in Energy Research, 2. doi, 10.3389/fenrg.2014.00062

    Sitepu, I. R., Shi, S., Simmons, B. A., Singer, S. W., Boundy-Mills, K., & Simmons, C. W. (2014). “Yeast tolerance to the ionic liquid 1-ethyl-3-methylimidazolium acetate”. FEMS Yeast Res, 14(8), 1286-1294. doi, 10.1111/1567-1364.12224

    Slater, S. C., Simmons, B. A., Rogers, T. S., Phillips, M. F., Nordahl, K., & Davison, B. H. (2015). “The DOE Bioenergy Research Centers: History, Operations, and Scientific Output”. BioEnergy Research, 1-16. doi, 10.1007/s12155-015-9660-8

    Smith-Moritz, A. M., Hao, Z., Fernández-Niño, S. G., Fangel, J. U., Verhertbruggen, Y., Holman, H.-Y. N., Willats, W. G. T., Ronald, P. C., Scheller, H. V., Heazlewood, J. L., & Vega-Sánchez, M. E. (2015). “Structural characterization of a mixed-linkage glucan deficient mutant reveals alteration in cellulose microfibril orientation in rice coleoptile mesophyll cell walls”. [Original Research]. Frontiers in Plant Science, 6. doi, 10.3389/fpls.2015.00628

    Sun, L., Singh, S., Joo, M., Vega-Sanchez, M., Ronald, P., Simmons, B. A., Adams, P., & Auer, M. (2015). “Non-invasive imaging of cellulose microfibril orientation within plant cell walls by polarized Raman microspectroscopy”. Biotechnol Bioeng. doi, 10.1002/bit.25690

    Sun, N., Xu, F., Sathitsuksanoh, N., Thompson, V. S., Cafferty, K., Li, C., Tanjore, D., Narani, A., Pray, T. R., Simmons, B. A., & Singh, S. (2015). “Blending municipal solid waste with corn stover for sugar production using ionic liquid process”. Bioresour Technol, 186(0), 200-206. doi, 10.1016/j.biortech.2015.02.087

    Tanger, P., Vega-Sánchez, M. E., Fleming, M., Tran, K., Singh, S., Abrahamson, J. B., Jahn, C. E., Santoro, N., Naredo, E. B., Baraoidan, M., Danku, J. M. C., Salt, D. E., McNally, K. L., Simmons, B. A., Ronald, P. C., Leung, H., Bush, D. R., McKay, J. K., & Leach, J. E. (2015). “Cell Wall Composition and Bioenergy Potential of Rice Straw Tissues Are Influenced by Environment, Tissue Type, and Genotype”. BioEnergy Research, 1-18. doi, 10.1007/s12155-014-9573-y

    Torr, K. M., Love, K. T., Simmons, B. A., & Hill, S. J. (2015). “Structural features affecting the enzymatic digestibility of pine wood pretreated with ionic liquids”. Biotechnol Bioeng. doi, 10.1002/bit.25831

    Vega-Sanchez, M. E., Loque, D., Lao, J., Catena, M., Verhertbruggen, Y., Herter, T., Yang, F., Harholt, J., Ebert, B., Baidoo, E. E., Keasling, J. D., Scheller, H. V., Heazlewood, J. L., & Ronald, P. C. (2015). “Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls”. Plant Biotechnol J. doi, 10.1111/pbi.12326

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    Parsons, H. T., Weinberg, C. S., Macdonald, L. J., Adams, P. D., Petzold, C. J., Strabala, T. J., Wagner, A., & Heazlewood, J. L. (2013). “Golgi enrichment and proteomic analysis of developing Pinus radiata xylem by free-flow electrophoresis”. [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, Non-P.H.S.]. PLoS One, 8(12), e84669. doi, 10.1371/journal.pone.0084669

    Phelan, R. M., Sekurova, O. N., Keasling, J. D., & Zotchev, S. B. (2014). “Engineering Terpene Biosynthesis in Streptomyces for Production of the Advanced Biofuel Precursor Bisabolene”. ACS Synth Biol. doi, 10.1021/sb5002517

    Pradhan Mitra, P., & Loque, D. (2014). “Histochemical Staining of Arabidopsis thaliana Secondary Cell Wall Elements”. [Research Support, U.S. Gov’t, Non-P.H.S.]. J Vis Exp(87). doi, 10.3791/51381

    Rautengarten, C., Ebert, B., Moreno, I., Temple, H., Herter, T., Link, B., Doñas-Cofré, D., Moreno, A., Saéz-Aguayo, S., Blanco, F., Mortimer, J. C., Schultink, A., Reiter, W.-D., Dupree, P., Pauly, M., Heazlewood, J. L., Scheller, H. V., & Orellana, A. (2014). “The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis”. Proceedings of the National Academy of Sciences. doi, 10.1073/pnas.1406073111

    Reddy, A. P., Liles, M. R., Simmons, C. W., D’haeseleer, P., Khudyakov, J., Burd, H., Hadi, M., Simmons, B. A., Singer, S. W., Thelen, M. P., & VanderGheynst, J. S. (2013). “Discovery of Microorganisms and Enzymes Involved in High-Solids Decomposition of Rice Straw Using Metagenomic Analyses”. [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, Non-P.H.S.]. PLoS One, 8(10), e77985. doi, 10.1371/journal.pone.0077985

    Ren, Y., Hansen, S. F., Ebert, B., Lau, J., & Scheller, H. V. (2014). “Site-Directed Mutagenesis of IRX9, IRX9L and IRX14 Proteins Involved in Xylan Biosynthesis: Glycosyltransferase Activity Is Not Required for IRX9 Function in Arabidopsis”. PLoS One, 9(8), e105014. doi, 10.1371/journal.pone.0105014

    Rennie, E. A., Ebert, B., Miles, G. P., Cahoon, R. E., Christiansen, K. M., Stonebloom, S., Khatab, H., Twell, D., Petzold, C. J., Adams, P. D., Dupree, P., Heazlewood, J. L., Cahoon, E. B., & Scheller, H. V. (2014). “Identification of a Sphingolipid alpha-Glucuronosyltransferase That Is Essential for Pollen Function in Arabidopsis”. [Journal article]. Plant Cell, 26(8), 3314-3325. doi, 10.1105/tpc.114.129171

    Rennie, E. A., & Scheller, H. V. (2014). “Xylan biosynthesis”. [Research Support, U.S. Gov’t, Non-P.H.S. Review]. Curr Opin Biotechnol, 26, 100-107. doi, 10.1016/j.copbio.2013.11.013

    Rhee, M., Liu, P., Meagher, R. J., Light, Y. K., & Singh, A. K. (2014). “Versatile on-demand droplet generation for controlled encapsulation”. Biomicrofluidics, 8(3). doi, Artn 034112 Doi 10.1063/1.4874715 <Go to ISI>://000339004500012

    Rodriguez, S., Kirby, J., Denby, C. M., & Keasling, J. D. (2014). “Production and quantification of sesquiterpenes in Saccharomyces cerevisiae, including extraction, detection and quantification of terpene products and key related metabolites”. [Research Support, U.S. Gov’t, Non-P.H.S.]. Nat Protoc, 9(8), 1980-1996. doi, 10.1038/nprot.2014.132

    Ronald, P. C. (2014). “Lab to farm: applying research on plant genetics and genomics to crop improvement”. [Research Support, N.I.H., Extramural Research Support, U.S. Gov’t, Non-P.H.S.]. PLoS Biol, 12(6), e1001878. doi, 10.1371/journal.pbio.1001878

    Rotavera, B., Zador, J., Welz, O., Sheps, L., Scheer, A. M., Savee, J. D., Akbar Ali, M., Lee, T. S., Simmons, B. A., Osborn, D. L., Violi, A., & Taatjes, C. A. (2014). “Photoionization Mass Spectrometric Measurements of Initial Reaction Pathways in Low-Temperature Oxidation of 2,5-Dimethylhexane”. [Journal article]. J Phys Chem A, 19, 19. doi, 10.1021/jp507811d

    Ruegg, T. L., Kim, E. M., Simmons, B. A., Keasling, J. D., Singer, S. W., Soon Lee, T., & Thelen, M. P. (2014). “An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production”. [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, Non-P.H.S.]. Nat Commun, 5, 3490. doi, 10.1038/ncomms4490

    Runguphan, W., & Keasling, J. D. (2014). “Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals”. [Research Support, U.S. Gov’t, Non-P.H.S.]. Metab Eng, 21, 103-113. doi, 10.1016/j.ymben.2013.07.003

    Sarria, S., Wong, B., Martin, H. G., Keasling, J. D., & Peralta-Yahya, P. (2014). “Microbial Synthesis of Pinene”. ACS Synth Biol, 3(7), 466-475. doi, 10.1021/sb4001382

    Sathitsuksanoh, N., Holtman, K. M., Yelle, D. J., Morgan, T., Stavila, V., Pelton, J., Blanch, H., Simmons, B. A., & George, A. (2014). “Lignin fate and characterization during ionic liquid biomass pretreatment for renewable chemicals and fuels production”. Green Chemistry, 16(3), 1236-1247. doi, 10.1039/c3gc42295j <Go to ISI>://WOS:000332039200033

    Scullin, C., Stavila, V., Skarstad, A., Keasling, J. D., Simmons, B. A., & Singh, S. (2014). “Optimization of renewable pinene production from the conversion of macroalgae Saccharina latissima”. Bioresour Technol(0). doi, 10.1016/j.biortech.2014.09.105

    Shi, J., Balamurugan, K., Parthasarathi, R., Sathitsuksanoh, N., Zhang, S., Stavila, V., Subramanian, V., Simmons, B., & Singh, S. (2014). “Understanding the Role of Water during Ionic Liquid Pretreatment of Lignocellulose: Co-solvent or Anti-solvent?”. [10.1039/C4GC00373J]. Green Chemistry, 16(8), 3830. doi, 10.1039/c4gc00373j

    Simmons, C. W., Claypool, J. T., Marshall, M. N., Jabusch, L. K., Reddy, A. P., Simmons, B. A., Singer, S. W., Stapleton, J. J., & VanderGheynst, J. S. (2014). “Characterization of bacterial communities in solarized soil amended with lignocellulosic organic matter”. Applied Soil Ecology, 73, 97-104. doi, DOI 10.1016/j.apsoil.2013.08.014 <Go to ISI>://000329415500013

    Simmons, C. W., Reddy, A. P., Simmons, B. A., Singer, S. W., & VanderGheynst, J. S. (2014). “Effect of inoculum source on the enrichment of microbial communities on two lignocellulosic bioenergy crops under thermophilic and high-solids conditions”. [Research Support, U.S. Gov’t, Non-P.H.S.]. J Appl Microbiol, 117(4), 1025-1034. doi, 10.1111/jam.12609

    Simmons, C. W., Reddy, A. P., Vandergheynst, J. S., Simmons, B. A., & Singer, S. W. (2014). “Bacillus coagulans tolerance to 1-ethyl-3-methylimidazolium-based ionic liquids in aqueous and solid-state thermophilic culture”. [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, Non-P.H.S.]. Biotechnol Prog, 30(2), 311-316. doi, 10.1002/btpr.1859

    Socha, A. M., Parthasarathi, R., Shi, J., Pattathil, S., Whyte, D., Bergeron, M., George, A., Tran, K., Stavila, V., Venkatachalam, S., Hahn, M. G., Simmons, B. A., & Singh, S. (2014). “Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose”. Proc Natl Acad Sci U S A, 111(35), E3587-3595. doi, 10.1073/pnas.1405685111

    Sun, N., Parthasarathi, R., Socha, A. M., Shi, J., Zhang, S., Stavila, V., Sale, K. L., Simmons, B. A., & Singh, S. (2014). “Understanding pretreatment efficacy of four cholinium and imidazolium ionic liquids by chemistry and computation”. Green Chemistry, 16(5), 2546-2557. Doi 10.1039/C3gc42401d <Go to ISI>://000335005200025

    Szmidt-Middleton, H. L., Ouellet, M., Adams, P. D., Keasling, J. D., & Mukhopadhyay, A. (2013). “Utilizing a highly responsive gene, yhjX, in E. coli based production of 1,4-butanediol”. chemical engineering science, 103, 68-73. doi, 10.1016/j.ces.2013.06.044 <Go to ISI>://000325945800010

    Tobimatsu, Y., Wagner, A., Donaldson, L., Mitra, P., Niculaes, C., Dima, O., Kim, J. I., Anderson, N., Loque, D., Boerjan, W., Chapple, C., & Ralph, J. (2013). “Visualization of plant cell wall lignification using fluorescence-tagged monolignols”. [Research Support, Non-U.S. Gov’t Research Support, U.S. Gov’t, Non-P.H.S.]. Plant J, 76(3), 357-366. doi, 10.1111/tpj.12299

    Uppugundla, N., da Costa Sousa, L., Chundawat, S. P., Yu, X., Simmons, B., Singh, S., Gao, X., Kumar, R., Wyman, C. E., Dale, B. E., & Balan, V. (2014). “A comparative study of ethanol production using dilute acid, ionic liquid and AFEX pretreated corn stover”. Biotechnol Biofuels, 7(1), 72. doi, 10.1186/1754-6834-7-72

    Weaver, L. J., Sousa, M. M., Wang, G., Baidoo, E., Petzold, C. J., & Keasling, J. D. (2014). “A kinetic-based approach to understanding heterologous mevalonate pathway function in E. coli.”. Biotechnol. Bioeng. doi, 10.1002/bit.25323

    Winger, A. M., Heazlewood, J. L., Chan, L. J., Petzold, C. J., Permaul, K., & Singh, S. (2014). “Secretome analysis of the thermophilic xylanase hyper-producer Thermomyces lanuginosus SSBP cultivated on corn cobs”. J Ind Microbiol Biotechnol. doi, 10.1007/s10295-014-1509-1

    Woo, H. L., Hazen, T. C., Simmons, B. A., & DeAngelis, K. M. (2014). “Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils”. [Research Support, U.S. Gov’t, Non-P.H.S.]. Syst Appl Microbiol, 37(1), 60-67. doi, 10.1016/j.syapm.2013.10.001

    Woo, H. L., Utturkar, S., Klingeman, D., Simmons, B. A., DeAngelis, K. M., Brown, S. D., & Hazen, T. C. (2014). “Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil”. [Journal]. Genome Announc, 2(3), doi: 10. doi, 10.1128/genomeA.00637-14

    Woo, H. M., Murray, G. W., Batth, T. S., Prasad, N., Adams, P. D., Keasling, J. D., Petzold, C. J., & Lee, T. S. (2013). “Application of targeted proteomics and biological parts assembly in E. coli to optimize the biosynthesis of an anti-malarial drug precursor, amorpha-4,11-diene”. chemical engineering science, 103, 21-28. doi, DOI 10.1016/j.ces.2013.04.033 <Go to ISI>://000325945800004

    Yuzawa, S., Eng, C. H., Katz, L., & Keasling, J. D. (2014). “Enzyme analysis of the polyketide synthase leads to the discovery of a novel analog of the antibiotic alpha-lipomycin”. [Research Support, U.S. Gov’t, Non-P.H.S.]. J Antibiot (Tokyo), 67(2), 199-201. doi, 10.1038/ja.2013.110

  • Alonso-Gutierrez, J., Chan, R., Batth, T. S., Adams, P. D., Keasling, J. D., Petzold, C. J. and Lee, T. S. (2013). “Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production.” Metab Eng. 19C: 33-41.

    Bartley, L. E., Peck, M. L., Kim, S. R., Ebert, B., Maniseri, C., Chiniquy, D., Sykes, R., Gao, L., Rautengarten, C., Vega-Sanchez, M. E., Benke, P. I., Canlas, P. E., Cao, P., Brewer, S., Lin, F., Smith, W. L., Zhang, X., Keasling, J. D., Jentoft, R. E., Foster, S. B., Zhou, J., Ziebell, A., An, G., Scheller, H. V. and Ronald, P. C. (2013). “Overexpression of a BAHD Acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification.Plant Physiol. 161: 1615-1633.

    Batth, T. S., Keasling, J. D. and Petzold, C. J. (2012). “Targeted proteomics for metabolic pathway optimization.” Methods Mol Biol. 944: 237-249.

    Bokinsky, G., Baidoo, E. E., Akella, S., Burd, H., Weaver, D., Alonso-Gutierrez, J., Garcia-Martin, H., Lee, T. S. and Keasling, J. D. (2013). “HipA-triggered growth arrest and ?-lactam tolerance in Escherichia coli is mediated by RelA-dependent ppGpp synthesis.J. Bacteriol. 195(14): 3173-3182.

    Cetinkol, O. P., Smith-Moritz, A. M., Cheng, G., Lao, J., George, A., Hong, K., Henry, R., Simmons, B. A., Heazlewood, J. L. and Holmes, B. M. (2012). “Structural and chemical characterization of hardwood from tree species with applications as bioenergy feedstocks.PLoS One 7(12): e52820.

    Chandrasekaran A, Deng K, Koh CY, Takasuka T, Bergeman LF, Fox BG, Adams PD, Singh AK. “A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres.” Chem. Commun. 49(48): 5441-5443.

    Chang C, Sustarich J, Bharadwaj R, Chandrasekaran A, Adams PD, Singh AK. “Droplet-based microfluidic platform for heterogeneous enzymatic assays.” Lab Chip. 13(9): 1817-1822.

    Chen, X., Vega-Sánchez, M. E., Verhertbruggen, Y., Chiniquy, D., Canlas P, Fagerström, A., Prak, L., Christensen, U., Bartley, L., Oikawa, A., Chen, M., Zuo, S., Auer, M., Willats, W., Scheller, H., V, and Ronald, P. C. (2012). “Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification. ” Molecular Plant. 6(2):570-573.

    Chiniquy, D., Varanasi, P., Oh, T., Harholt, J., Katnelson, J., Singh, S., Auer, M., Simmons, B. A., Adams, P. D., Scheller, H.V., Ronald, P.C. (2013). “Three novel rice genes closely related to the Arabidopsis IRX9, IRX9L, and IRX14 genes and their roles in xylan biosynthesis.Frontiers Plant Biotechnol. 4: 83.

    Chiniquy, D., Sharma, V., Schultink, A., Baidoo, E. E., Rautengarten, C., Cheng, K., Carroll, A., Ulvskov, P., Harholt, J., Keasling, J. D., Pauly, M., Scheller, H. V. and Ronald, P. C. (2012). “XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.Proc Natl Acad Sci U S A. 109(42): 17117-17122.

    Chiu, T. Y., Christiansen, K., Moreno, I., Lao, J., Loque, D., Orellana, A., Heazlewood, J. L., Clark, G. and Roux, S. (2012). “AtAPY1 and AtAPY2 function as Golgi localized nucleoside diphosphatases in Arabidopsis thaliana.Plant and Cell Physiology. 53(11):1913-25.

    Chivian, D., Dehal, P. S., Keller, K. and Arkin, A. P. (2013). “MetaMicrobesOnline: phylogenomic analysis of microbial communities.Nucleic Acids Res 41(Database issue): D648-654.

    Chou, H. H. and Keasling, J. D. (2012). “Synthetic pathway for production of five-carbon alcohols from isopentenyl diphosphate.Appl Environ Microbiol. 78(22): 7849-7855.

    Cruz, A. G., Scullin, C., Mu, C., Cheng, G., Stavila, V., Varanasi, P., Xu, D., Mentel, J., Chuang, Y. D., Simmons, B. A. and Singh, S. (2013). “Impact of high biomass loading on ionic liquid pretreatment.Biotechnol Biofuels 6(1): 52.

    D’Haeseleer, P., Gladden, J. M., Allgaier, M., Chain, P., Tringe, S., Malfatti, S., Aldrich, J., Nicora, C., Robinson, E., Pasa-Tolic, L., Hugenholtz, P., Simmons, B. A. and Singer, S. W. (2013). “Proteogenomic Analysis of a thermophilic bacterial consortiu, adapted to deconstruct switchgrass.” PLoS One 8(7): e68465.

    DeAngelis, K., D’Haeseleer, P., Chivian, D., Simmons, B. A., Arkin, A. P., Mavromatis, K., Malfatti, S., Tringe, S. and Hazen, T. (2013). “Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.Standards in Genomic Sciences. 7(3):382-398.

    DeAngelis, K. M., Sharma, D., Varney, R., Simmons, B., Isern, N. G., Markilllie, L. M., Nicora, C., Norbeck, A. D., Taylor, R. C., Aldrich, J. T. and Robinson, E. W. (2013). “Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.” Front Microbiol. 4: 280.

    De Michele, R., Ast, C., Loque, D., Ho, C. H., Andrade, S. L. A., Lanquar, V., Grossmann, G., Gehne, S., Kumke, M. U. and Frommer, W. B. (2013). “Fluorescent sensors reporting the activity of ammonium transceptors in live cells.” eLife 2: e00800.

    de Rond, T., Peralta-Yahya, P., Cheng, X., Northen, TR, and Keasling, JD (2013) “Versatile synthesis of probes for high throughput enzyme activity screening.” Anal.Bioanal. Chem. 405:4969-4973

    Dietrich, J. A., Shis, D. L., Alikhani, A. and Keasling, J. D. (2012). “Transcription Factor-Based Screens and Synthetic Selections for Microbial Small-Molecule Biosynthesis.ACS Synthetic Biology: 121114093111002.

    Eichorst, S. A., Varanasi, P., Stavila, V., Zemla, M., Auer, M., Singh, S., Simmons, B. A. and Singer, S. W. (2013). “Community dynamics of cellulose-adapted thermophilic bacterial consortia.” Environ Microbiol. 15(9):2573-87.

    Eudes, A., Juminaga, D., Baidoo, E. E., Collins, F. W., Keasling, J. D. and Loque, D. (2013). “Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli.” Microb Cell Fact. 12: 62.

    Gille S, Sharma V, Baidoo EEK, Keasling JD, Scheller HV, Pauly M (2013). “Arabinosylation of a cell wall arabinogalactanprotein impacts root growth as exemplified by the Arabidopsis glycosyltransferase mutant ray1.” Mol Plant. 6(4): 1369-1372.

    Goldberg, A., Linshiz, G., Koudritsky, M., Chemodanov, A., and Hillson, N.J. (2012). “Distributed marine biorefineries for developing economiesProceedings of the ASME 2012 International Mechanical Engineering Congress & Exposition IMECE2012-86051.

    Groff, D., George, A., Sun, N., Sathitsuksanh, N., Bokinsky, G., Simmons, B. A., Holmes, B. and Keasling, J. D. (2013). “Acid Enhanced Ionic Liquid Pretreatment of Biomass.Green Chemistry. 15: 1264-67.

    Keasling, J. D., Mendoza, A. and Baran, P. S. (2012). “Synthesis: A constructive debate.” Nature. 492(7428): 188-189.

    Klein-Marcuschamer D, Chisti Y, Benemann JR, Lewis D. “A matter of detail: Assessing the true potential of microalgal biofuels.” (2013) Biotechnology and Bioengineering. June 3, 2013. Epub ahead of print.

    Klein-Marcuschamer, D., Turner, C., Allen, M., Gray, P., Dietzgen, R. G., Gresshoff, P. M., Hankamer, B., Heimann, K., Scott, P. T., Stephens, E., Speight, R. and Nielsen, L. K. (2013). “Technoeconomic analysis of renewable aviation fuel from microalgae,Pongamia pinnata, and sugarcane.” Biofuels, Bioproducts and Biorefining. 7(4): 416-428.

    Kung, Y., Runguphan, W. and Keasling, J. D. (2013). “From fields to fuels: recent advances in the microbial production of biofuels.” ACS Synth Biol. 1(11): 498-513.

    Linshiz, G., Goldberg, A., Konry, T. and Hillson, N. J. (2012). “The fusion of biology, computer science, and engineering: towards efficient and successful synthetic biology.Perspect Biol Med 55(4): 503-520.

    Linshiz, G., Stawski, N., Poust, S., Bi, C., Keasling, J. D. and Hillson, N. J. (2012). “PaR-PaR Laboratory Automation Platform.ACS Synthetic Biology 2 (5), 216–222.

    Liwanag, A. J. M., Ebert, B., Verhertbruggen, Y., Rennie, E. A., Rautengarten, C., Oikawa, A., Andersen, M. C. F., Clausen, M. H. and Scheller, H. V. (2012). “Pectin Biosynthesis: GALS1 (AT2g33570) in arabidopsis thaliana is a beta-1,4-galactan beta-1,4-galactosyltransferase.Plant Cell. 24:5024-36.

    Lupoi, J., Singh, S., Simmons, B. A. and Henry, R. (2013). “Assessment of Lignocellulosic Biomass Using Analytical Spectroscopy: An Evolution to High Throughput Techniques.” Bioenergy Research [epub only]

    Manabe, Y., Verhertbruggen, Y., Gille, S., Harholt, J., Chong, S. L., Pawar, P. M. A., Mellerowicz, E., Tenkanen, M., Cheng, K., Pauly, M. and Scheller, H. (2013). “RWA Proteins Play Vital and Distinct Roles in Cell Wall O-Acetylation in Arabidopsis thaliana.” Plant Physiology. [epub only]

    Mann GW, Joshi HJ, Petzold CJ, Heazlewood JL (2013) “Proteome coverage of the model plant Arabidopsis thaliana: implications for shotgun proteomic studies.Journal of Proteomics. 79: 195-99.

    McAndrew RP, Park JI, Heins RA, Reindl W, Friedland GD, D’haeseleer P, Northen T, Sale KL, Simmons BA, Adams PD. “From soil to structure: a novel dimeric ?-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysisJ. Biol. Chem. [epub ahead of print.]

    Mueller, J., MacEachran, D., Burd, H., Sathitsuksanoh, N., Bi, C., Yeh, Y. C., Lee, T. S., Hillson, N., Chhabra, S., Singer, S. W. and Beller, H. R. (2013). “Engineering of Ralstonia eutrophia H16 for Autotrophic and hetertrophic production of methyl ketones.” Appl Environ Microbiol 79(14): 4433-4439.

    Mutalik, V. K., Guimaraes, J. C., Cambray, G., Lam, C., Christoffersen, M. J., Mai, Q. A., Tran, A. B., Paull, M., Keasling, J. D., Arkin, A. P. and Endy, D. (2013). “Precise and reliable gene expression via standard transcription and translation initiation elements.” Nat Methods. 10(4): 354-360.

    Mutalik, V. K., Guimaraes, J. C., Cambray, G., Mai, Q. A., Christoffersen, M. J., Martin, L., Yu, A., Lam, C., Rodriguez, C., Bennett, G., Keasling, J. D., Endy, D. and Arkin, A. P. (2013). “Quantitative estimation of activity and quality for collections of functional genetic elements.” Nat Methods. 10(4): 347-353.

    Oikawa, A., Lund, C. H., Sakuragi, Y. and Scheller, H. V. (2013). “Golgi-localized enzyme complexes for plant cell wall biosynthesis.Trends Plant Sci 18(1): 49-58.

    Ozaydin, B., Burd, H., Lee, T. S. and Keasling, J. D. (2013). “Carotenoid-based phenotypic screen of the yeast deletion collection reveals new genes with roles in isoprenoid production.” Metab Eng. 15: 174-183.

    Paap, S. M., West, T. H., Manley, D. K., Steen, E. J., Beller, H. R., Keasling, J. D., Dibble, D. C., Chang, S. and Simmons, B. A. (2013). “Biochemical production of ethanol and fatty acid ethyl esters from switchgrass: A comparative analysis of environmental and economic performance.Biomass and Bioenergy. 49: 49-62.

    Parsons, H. T., Drakakaki, G. and Heazlewood, J. L. (2012). “Proteomic dissection of the Arabidopsis Golgi and trans-Golgi network.Front Plant Sci. 3: 298.

    Pereira, J. H., Goh, E. B., Keasling, J. D., Beller, H. R. and Adams, P. D. (2012). “Structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus.Acta Crystallogr D Biol Crystallogr 68(Pt 10): 1320-1328.

    Perez-Pimienta, J. A., Lopez-Ortega, M. G., Varanasi, P., Stavila, V., Cheng, G., Singh, S. and Simmons, B. A. (2013). “Comparison of the impact of ionic liquid pretreatment on recalcitrance of agave bagasse and switchgrass.Bioresour Technol 127: 18-24.

    Petersen, P. D., Lau, J., Ebert, B., Yang, F., Verhertbruggen, Y., Kim, J. S., Varanasi, P., Suttangkakul, A., Auer, M., Loque, D. and Scheller, H. V. (2012). “Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants.Biotechnol Biofuels. 5:84.

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