Publications


  • Wehrs, M., Tanjore, D., Eng, T., Lievense, J., Pray, T. R., & Mukhopadhyay, A. (2019). Engineering Robust Production Microbes for Large-Scale Cultivation. Trends Microbiol. https://doi.org/10.1016/j.tim.2019.01.006
    Lakusta, A. M., Kwon, M., Kwon, E. J. G., Stonebloom, S., Scheller, H. V., & Ro, D. K. (2019). Molecular Studies of the Protein Complexes Involving Cis-Prenyltransferase in Guayule (Parthenium argentatum), an Alternative Rubber-Producing Plant. Front Plant Sci, 10, 165. https://doi.org/ARTN 165 10.3389/fpls.2019.00165
    Stonebloom, S. H., & Scheller, H. V. (2019). Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray). BMC Plant Biol, 19(1), 71. https://doi.org/ARTN 71 10.1186/s12870-019-1669-2
    Matheus Carnevali, P. B., Schulz, F., Castelle, C. J., Kantor, R. S., Shih, P. M., Sharon, I., … Banfield, J. F. (2019). Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nat Commun, 10(1), 463. https://doi.org/10.1038/s41467-018-08246-y
    Tian, T., Kang, J. W., Kang, A., & Lee, T. S. (2019). Redirecting metabolic flux via combinatorial multiplex CRISPRi-mediated repression for isopentenol production in E. coli. ACS Synth Biol. https://doi.org/10.1021/acssynbio.8b00429
    Heinemann, J. (2019). Machine Learning in Untargeted Metabolomics Experiments. In E. E. K. Baidoo (Ed.), Microbial Metabolomics: Methods and Protocols (pp. 287–299). New York, NY: Springer New York.
    Heinemann, J. (2019). Cluster Analysis of Untargeted Metabolomic Experiments. In E. E. K. Baidoo (Ed.), Microbial Metabolomics: Methods and Protocols (pp. 275–285). New York, NY: Springer New York.
    Baidoo, E. E. K., & Teixeira Benites, V. (2019). Mass Spectrometry-Based Microbial Metabolomics: Techniques, Analysis, and Applications. In E. E. K. Baidoo (Ed.), Microbial Metabolomics: Methods and Protocols (pp. 11–69). New York, NY: Springer New York.
    Joshua, C. J. (2019). Metabolomics: A Microbial Physiology and Metabolism Perspective. In E. E. K. Baidoo (Ed.), Microbial Metabolomics: Methods and Protocols (pp. 71–94). New York, NY: Springer New York.
    Baidoo, E. E. K. (2019). Microbial Metabolomics: A General Overview. In E. E. K. Baidoo (Ed.), Microbial Metabolomics: Methods and Protocols (pp. 1–8). New York, NY: Springer New York.
    Ando, D., & García Martín, H. (2019). Genome-Scale 13C Fluxomics Modeling for Metabolic Engineering of Saccharomyces cerevisiae. In E. E. K. Baidoo (Ed.), Microbial Metabolomics: Methods and Protocols (pp. 317–345). New York, NY: Springer New York.
    Liu, W., Xiang, Y., Zhang, X., Han, G., Sun, X., Sheng, Y., … Zhang, A. (2019). Over-Expression of a Maize N-Acetylglutamate Kinase Gene (ZmNAGK) Improves Drought Tolerance in Tobacco. Front Plant Sci, 9, 1902. https://doi.org/10.3389/fpls.2018.01902
    Leynaud-Kieffer, L. M. C., Curran, S. C., Kim, I., Magnuson, J. K., Gladden, J. M., Baker, S. E., & Simmons, B. A. (2019). A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable. PLoS One, 14(1), e0210243. https://doi.org/10.1371/journal.pone.0210243
    Chen, Y., Vu, J., Thompson, M. G., Sharpless, W. A., Chan, L. J. G., Gin, J. W., … Petzold, C. J. (2019). A rapid methods development workflow for high-throughput quantitative proteomic applications. PLoS One, 14(2), e0211582. https://doi.org/10.1371/journal.pone.0211582
    Baral, N. R., Kavvada, O., Mendez-Perez, D., Mukhopadhyay, A., Lee, T. S., Simmons, B. A., & Scown, C. D. (2019). Techno-economic analysis and life-cycle greenhouse gas mitigation cost of five routes to bio-jet fuel blendstocks. Energy & Environmental Science. https://doi.org/10.1039/c8ee03266a
    Oyetunde, T., Liu, D., Martin, H. G., & Tang, Y. J. (2019). Machine learning framework for assessment of microbial factory performance. PLoS One, 14(1), e0210558. https://doi.org/10.1371/journal.pone.0210558


  • Meadows, C. W., Mingardon, F., Garabedian, B. M., Baidoo, E. E. K., Benites, V. T., Rodrigues, A. V., … Lee, T. S. (2018). Discovery of novel geranylgeranyl reductases and characterization of their substrate promiscuity. Biotechnology for Biofuels, 11(1), 340. https://doi.org/10.1186/s13068-018-1342-2
    Wehrs, M., Prahl, J. P., Moon, J., Li, Y., Tanjore, D., Keasling, J. D., … Mukhopadhyay, A. (2018). Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae. Microb Cell Fact, 17(1), 193. https://doi.org/10.1186/s12934-018-1045-1
    Pomraning, K. R., Bredeweg, E. L., Kerkhoven, E. J., Barry, K., Haridas, S., Hundley, H., … Baker, S. E. (2018). Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica. MSphere, 3(6), e00541-18. https://doi.org/10.1128/mSphere.00541-18
    Wang, S., Cheng, G., Dong, J., Tian, T., Lee, T. S., Mukhopadhyay, A., … Singer, S. W. (2018). Tolerance Characterization and Isoprenol Production of Adapted Escherichia coli in the Presence of Ionic Liquids. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.8b05144
    Baral, N. R., Quiroz-Arita, C., & Bradley, T. H. (2018). Probabilistic Lifecycle Assessment of Butanol Production from Corn Stover Using Different Pretreatment Methods. Environ Sci Technol. https://doi.org/10.1021/acs.est.8b05176
    Morton, S. A., Gupta, S., Petzold, C. J., & Ralston, C. (2018). Recent Advances in X-Ray Hydroxl Radical Footprinting at the Advanced Light Source Synchrotron. Protein Pept Lett, 26, 1–1. https://doi.org/10.2174/0929866526666181128125725
    Satchwell, A. J., Scown, C. D., Smith, S. J., Amirebrahimi, J., Jin, L., Kirchstetter, T. W., … Preble, C. V. (2018). Accelerating the Deployment of Anaerobic Digestion to Meet Zero Waste Goals. Environ Sci Technol, 52(23), 13663–13669. https://doi.org/10.1021/acs.est.8b04481
    Czajka, J. J., Abernathy, M. H., Benites, V. T., Baidoo, E. E. K., Deming, J. W., & Tang, Y. J. (2018). Model metabolic strategy for heterotrophic bacteria in the cold ocean based on Colwellia psychrerythraea 34H. Proc Natl Acad Sci U S A, 115(49), 12507. https://doi.org/10.1073/pnas.1807804115
    Budin, I., & Keasling, J. D. (2018). Synthetic Biology for Fundamental Biochemical Discovery. Biochemistry. https://doi.org/10.1021/acs.biochem.8b00915
    Goyal, G., Costello, Z., Gutierrez, J. A., Kang, A., Lee, T. S., Martin, H. G., & Hillson, N. J. (2018). Parallel Integration and Chromosomal Expansion of Metabolic Pathways. ACS Synth Biol. https://doi.org/10.1021/acssynbio.8b00243
    Budin, I., de Rond, T., Chen, Y., Chan, L. J. G., Petzold, C. J., & Keasling, J. D. (2018). Viscous control of cellular respiration by membrane lipid composition. Science. https://doi.org/10.1126/science.aat7925
    Liu, C.-L., Tian, T., Alonso-Gutierrez, J., Garabedian, B., Wang, S., Baidoo, E. E. K., … Lee, T. S. (2018). Renewable production of high density jet fuel precursor sesquiterpenes from Escherichia coli. Biotechnology for Biofuels, 11(1), 285. https://doi.org/10.1186/s13068-018-1272-z
    Wu, L., Gokhale, A., Goulas, K. A., Myers, J. E., Dean Toste, F., & Scown, C. D. (2018). Hybrid Biological–Chemical Approach Offers Flexibility and Reduces the Carbon Footprint of Biobased Plastics, Rubbers, and Fuels. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.8b03158
    Jiang, H. J., Imberti, S., Simmons, B. A., Atkin, R., & Warr, G. (2018). Structural Design of Ionic Liquids for Optimizing Aromatic Dissolution. ChemSusChem, 0(ja). https://doi.org/10.1002/cssc.201802016
    Eng, T., Demling, P., Herbert, R. A., Chen, Y., Benites, V., Martin, J., … Mukhopadhyay, A. (2018). Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC. Microb Cell Fact, 17(1), 159. https://doi.org/10.1186/s12934-018-1006-8
    Villegas Calvo, M., Colombo, B., Corno, L., Eisele, G., Cosentino, C., Papa, G., … Adani, F. (2018). Bioconversion of Giant Cane for Integrated Production of Biohydrogen, Carboxylic Acids, and Polyhydroxyalkanoates (PHAs) in a Multistage Biorefinery Approach. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.8b03794
    Mortimer, J. C. (2018). Plant synthetic biology could drive a revolution in biofuels and medicine. Exp Biol Med (Maywood), 1535370218793890. https://doi.org/10.1177/1535370218793890
    Ebert, B., Rautengarten, C., McFarlane, H. E., Rupasinghe, T., Zeng, W., Ford, K., … Heazlewood, J. L. (2018). A Golgi UDP-GlcNAc transporter delivers substrates for N-linked glycans and sphingolipids. Nat Plants, 4(10), 792–801. https://doi.org/10.1038/s41477-018-0235-5
    Sechet, J., Htwe, S., Urbanowicz, B., Agyeman, A., Feng, W., Ishikawa, T., … Mortimer, J. C. (2018). Suppressing Arabidopsis GGLT1 affects growth by reducing the L-galactose content and borate cross-linking of rhamnogalacturonan II. Plant J, 0(ja). https://doi.org/10.1111/tpj.14088
    Ruegg, T. L., Pereira, J. H., Chen, J. C., DeGiovanni, A., Novichkov, P., Mutalik, V. K., … Thelen, M. P. (2018). Jungle Express is a versatile repressor system for tight transcriptional control. Nat Commun, 9(1), 3617. https://doi.org/10.1038/s41467-018-05857-3
    Li, G., Jones, K. C., Eudes, A., Pidatala, V. R., Sun, J., Xu, F., … Ronald, P. C. (2018). Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification. BMC Biotechnol, 18(1), 54. https://doi.org/10.1186/s12896-018-0464-8
    Ebert, B., Birdseye, D., Liwanag, A. J. M., Laursen, T., Rennie, E. A., Guo, X., … Scheller, H. V. (2018). The Three Members of the Arabidopsis thaliana Glycosyltransferase Family 92 are Functional beta-1,4-Galactan Synthases. Plant Cell Physiol, pcy180–pcy180. https://doi.org/10.1093/pcp/pcy180
    Stranne, M., Ren, Y., Fimognari, L., Birdseye, D., Yan, J., Bardor, M., … Sakuragi, Y. (2018). TBL10 is required for O-acetylation of pectic rhamnogalacturonan-I in Arabidopsis thaliana. Plant J, 0(ja). https://doi.org/10.1111/tpj.14067
    Liang, L., Yan, J., He, Q., Luong, T., Pray, T. R., Simmons, B. A., & Sun, N. (2018). Scale-up of Biomass Conversion using 1-Ethyl-3-methylimidazolium Acetate as the Solvent. Green Energy & Environment. https://doi.org/10.1016/j.gee.2018.07.002
    Bouxin, F. P., Strub, H., Dutta, T., Aguilhon, J., Morgan, T. J., Mingardon, F., … George, A. (2018). Elucidating transfer hydrogenation mechanisms in non-catalytic lignin depolymerization. Green Chemistry, 20(15), 3566–3580. https://doi.org/10.1039/c7gc03239k
    Ulvskov, P., & Scheller, H. V. (2018). Cell walls have a new family. Nat Plants, 4(9), 635–636. https://doi.org/10.1038/s41477-018-0222-x
    Baker, S. E. (2018). Protein hyperproduction in fungi by design. Appl Microbiol Biotechnol. https://doi.org/10.1007/s00253-018-9265-1
    Oyetunde, T., Bao, F. S., Chen, J. W., Martin, H. G., & Tang, Y. J. (2018). Leveraging knowledge engineering and machine learning for microbial bio-manufacturing. Biotechnol Adv, 36(4), 1308–1315. https://doi.org/10.1016/j.biotechadv.2018.04.008
    Duncombe, T. A., Raad, M., Bowen, B. P., Singh, A. K., & Northen, T. R. (2018). Insulator Nanostructure Desorption Ionization Mass Spectrometry. Anal Chem. https://doi.org/10.1021/acs.analchem.8b01989
    Higgins, D. A., Young, M. K., Tremaine, M., Sardi, M., Fletcher, J. M., Agnew, M., … Sato, T. K. (2018). Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast. Genetics. https://doi.org/10.1534/genetics.118.301161
    Yan, J., Aznar, A., Chalvin, C., Birdseye, D. S., Baidoo, E. E. K., Eudes, A., … Scheller, H. V. (2018). Increased drought tolerance in plants engineered for low lignin and low xylan content. Biotechnol Biofuels, 11(1), 195. https://doi.org/10.1186/s13068-018-1196-7
    Garsmeur, O., Droc, G., Antonise, R., Grimwood, J., Potier, B., Aitken, K., … D’Hont, A. (2018). A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nat Commun, 9(1), 2638. https://doi.org/10.1038/s41467-018-05051-5
    Ellinghaus, T. L., Pereira, J. H., McAndrew, R. P., Welner, D. H., DeGiovanni, A. M., Guenther, J. M., … Adams, P. D. (2018). Engineering glycoside hydrolase stability by the introduction of zinc binding. Acta Crystallogr D Struct Biol, 74(Pt 7), 702–710. https://doi.org/10.1107/S2059798318006678
    Ishikawa, T., Fang, L., Rennie, E. A., Sechet, J., Yan, J. W., Jing, B. B., … Mortimer, J. C. (2018). GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase. Plant Physiol, 177(3), 938–952. https://doi.org/10.1104/pp.18.00396
    Kimbrel, J. A., Ballor, N., Wu, Y. W., David, M. M., Hazen, T. C., Simmons, B. A., … Jansson, J. K. (2018). Microbial Community Structure and Functional Potential Along a Hypersaline Gradient. Front Microbiol, 9(1492), 1492. https://doi.org/10.3389/fmicb.2018.01492
    Davis, S. J., Lewis, N. S., Shaner, M., Aggarwal, S., Arent, D., Azevedo, I. L., … Caldeira, K. (2018). Net-zero emissions energy systems. Science, 360(6396). https://doi.org/10.1126/science.aas9793
    Curran, S. C., Hagen, A., Poust, S., Chan, L. J. G., Garabedian, B. M., de Rond, T., … Keasling, J. D. (2018). Probing the Flexibility of an Iterative Modular Polyketide Synthase with Non-Native Substrates in Vitro. Acs Chemical Biology. https://doi.org/10.1021/acschembio.8b00422
    Sundstrom, E., Yaegashi, J., Yan, J. P., Masson, F., Papa, G., Rodriguez, A., … Gladden, J. (2018). Demonstrating a separation-free process coupling ionic liquid pretreatment, saccharification, and fermentation with Rhodosporidium toruloides to produce advanced biofuels. Green Chemistry, 20(12), 2870–2879. https://doi.org/10.1039/c8gc00518d
    Costello, Z., & Martin, H. G. (2018). A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data. Npj Systems Biology And Applications, 4(1), 19. https://doi.org/10.1038/s41540-018-0054-3
    Hanko, E. K. R., Denby, C. M., Sànchez i Nogué, V., Lin, W., Ramirez, K. J., Singer, C. A., … Keasling, J. D. (2018). Engineering β-oxidation in Yarrowia lipolytica for methyl ketone production. Metabolic Engineering, 48, 52–62. https://doi.org/https://doi.org/10.1016/j.ymben.2018.05.018
    Xu, F., Sun, J., Wehrs, M., Kim, K. H., Rau, S. S., Chan, A. M., … Singh, S. (2018). Biocompatible Choline-Based Deep Eutectic Solvents Enable One-Pot Production of Cellulosic Ethanol. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.8b01271
    Kohler, A. C., Simmons, B. A., & Sale, K. L. (2018). Structure-based Engineering of a Plant-Fungal Hybrid Peroxidase for Enhanced Temperature and pH Tolerance. Cell Chem Biol. https://doi.org/10.1016/j.chembiol.2018.04.014
    Xu, L., Naylor, D., Dong, Z., Simmons, T., Pierroz, G., Hixson, K. K., … Coleman-Derr, D. (2018). Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria. Proc Natl Acad Sci U S A. https://doi.org/10.1073/pnas.1717308115
    Liu, D., Sun, J., Simmons, B. A., & Singh, S. (2018). N-Heterocyclic Carbene Promoted Decarboxylation of Lignin-derived Aromatic Acids. ACS Sustainable Chemistry & Engineering. https://doi.org/10.1021/acssuschemeng.7b03612
    Zhalnina, K., Louie, K. B., Hao, Z., Mansoori, N., da Rocha, U. N., Shi, S., … Brodie, E. L. (2018). Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol, 3(4), 470–480. https://doi.org/10.1038/s41564-018-0129-3
    Denby, C. M., Li, R. A., Vu, V. T., Costello, Z., Lin, W., Chan, L. J. G., … Keasling, J. D. (2018). Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer. Nat Commun, 9(1), 965. https://doi.org/10.1038/s41467-018-03293-x
    Wu, W., Liu, F., & Singh, S. (2018). Toward engineering E. coli with an autoregulatory system for lignin valorization. Proc Natl Acad Sci U S A, 115(12), 2970–2975. https://doi.org/10.1073/pnas.1720129115
    Beller, H. R., Rodrigues, A. V., Zargar, K., Wu, Y. W., Saini, A. K., Saville, R. M., … Keasling, J. D. (2018). Discovery of enzymes for toluene synthesis from anoxic microbial communities. Nat Chem Biol. https://doi.org/10.1038/s41589-018-0017-4
    Wong, J., d’Espaux, L., Dev, I., van der Horst, C., & Keasling, J. (2018). De novo synthesis of the sedative valerenic acid in Saccharomyces cerevisiae. Metab Eng, 47, 94–101. https://doi.org/10.1016/j.ymben.2018.03.005
    Butler, J. B., Freeman, J. S., Potts, B. M., Vaillancourt, R. E., Grattapaglia, D., Silva-Junior, O. B., … Shepherd, M. (2018). Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Heredity (Edinb). https://doi.org/10.1038/s41437-018-0058-1


  • Alonso-Gutierrez, J., Koma, D., Hu, Q., Yang, Y., Chan, L. J. G., Petzold, C. J., … Lee, T. S. (2017). Towards industrial production of isoprenoids in Escherichia coli: lessons learned from CRISPR-Cas9 based optimization of a chromosomally integrated mevalonate pathway. Biotechnol Bioeng, n/a-n/a. https://doi.org/10.1002/bit.26530
    Kim, K. H., Brown, R. C., Daugaard, T., Tivol, W. F., Auer, M., Simmons, B., & Singh, S. (2017). Strategy for Extending the Stability of Bio-oil-Derived Phenolic Oligomers by Mild Hydrotreatment with Ionic-Liquid-Stabilized Nanoparticles. ChemSusChem, n/a-n/a. https://doi.org/10.1002/cssc.201601515
    Brown, M. E., Mukhopadhyay, A., & Keasling, J. D. (2017). Engineering Bacteria to Catabolize the Carbonaceous Component of Sarin: Teaching E. coli to Eat Isopropanol. ACS Synthetic Biology, 5(12), 1485–1496. https://doi.org/10.1021/acssynbio.6b00115
    Lenarcic, T., Albert, I., Bohm, H., Hodnik, V., Pirc, K., Zavec, A. B., … Nurnberger, T. (2017). Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins. Science, 358(6369), 1431–1434. https://doi.org/10.1126/science.aan6874
    Wong, J., de Rond, T., d’Espaux, L., van der Horst, C., Dev, I., Rios-Solis, L., … Keasling, J. (2017). High-titer production of lathyrane diterpenoids from sugar by engineered Saccharomyces cerevisiae. Metab Eng, 45, 142–148. https://doi.org/10.1016/j.ymben.2017.12.007
    Heinemann, J., Deng, K., Shih, S. C., Gao, J., Adams, P. D., Singh, A. K., & Northen, T. R. (2017). On-chip integration of droplet microfluidics and nanostructure-initiator mass spectrometry for enzyme screening. Lab Chip. https://doi.org/10.1039/c6lc01182a
    Wu, Y. W., Higgins, B., Yu, C., Reddy, A. P., Ceballos, S., Joh, L. D., … VanderGheynst, J. S. (2017). Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis. MSystems, 1(6). https://doi.org/10.1128/mSystems.00120-16
    Yu, C., Simmons, B. A., Singer, S. W., Thelen, M. P., & VanderGheynst, J. S. (2017). Ionic liquid-tolerant microorganisms and microbial communities for lignocellulose conversion to bioproducts. Applied Microbiology and Biotechnology, 100(24), 10237–10249. https://doi.org/10.1007/s00253-016-7955-0
    Park, C. J., Wei, T., Sharma, R., & Ronald, P. C. (2017). Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae. Rice (N Y), 10(1), 27. https://doi.org/10.1186/s12284-017-0166-1
    Fang, L., Ishikawa, T., Rennie, E. A., Murawska, G. M., Lao, J., Yan, J., … Mortimer, J. C. (2017). Loss of Inositol Phosphorylceramide Sphingolipid Mannosylation Induces Plant Immune Responses and Reduces Cellulose Content in Arabidopsis. Plant Cell. https://doi.org/10.1105/tpc.16.00186
    Reider Apel, A., d’Espaux, L., Wehrs, M., Sachs, D., Li, R. A., Tong, G. J., … Mukhopadhyay, A. (2017). A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae. Nucleic Acids Res. https://doi.org/10.1093/nar/gkw1023
    Liu, D., Kim, K. H., Sun, J., Simmons, B., & Singh, S. (2017). Cascade production of lactic acid from universal types of sugars catalyzed by lanthanum triflate. ChemSusChem, n/a-n/a. https://doi.org/10.1002/cssc.201701902
    Yuzawa, S., Bailey, C. B., Fujii, T., Jocic, R., Barajas, J. F., Benites, V. T., … Keasling, J. D. (2017). Heterologous Gene Expression of N-Terminally Truncated Variants of LipPks1 Suggests a Functionally Critical Structural Motif in the N-terminus of Modular Polyketide Synthase. Acs Chemical Biology, 12(11), 2725–2729. https://doi.org/10.1021/acschembio.7b00714
    Perez-Pimienta, J. A., Vargas-Tah, A., Lopez-Ortega, K. M., Medina-Lopez, Y. N., Mendoza-Perez, J. A., Avila, S., … Martinez, A. (2017). Sequential enzymatic saccharification and fermentation of ionic liquid and organosolv pretreated agave bagasse for ethanol production. Bioresource Technology, 225, 191–198. https://doi.org/10.1016/j.biortech.2016.11.064
    Yuzawa, S., Keasling, J. D., & Katz, L. (2017). Bio-based production of fuels and industrial chemicals by repurposing antibiotic-producing type I modular polyketide synthases: opportunities and challenges. J Antibiot (Tokyo). https://doi.org/10.1038/ja.2016.136
    Mohamed, E. T., Wang, S., Lennen, R. M., Herrgard, M. J., Simmons, B. A., Singer, S. W., & Feist, A. M. (2017). Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution. Microb Cell Fact, 16(1), 204. https://doi.org/10.1186/s12934-017-0819-1
    Schuerg, T., Prahl, J.-P., Gabriel, R., Harth, S., Tachea, F., Chen, C.-S., … Singer, S. W. (2017). Xylose induces cellulase production in Thermoascus aurantiacus. Biotechnology for Biofuels, 10(1), 271. https://doi.org/10.1186/s13068-017-0965-z
    Kolinko, S., Wu, Y. W., Tachea, F., Denzel, E., Hiras, J., Gabriel, R., … Singer, S. W. (2017). A bacterial pioneer produces cellulase complexes that persist through community succession. Nat Microbiol. https://doi.org/10.1038/s41564-017-0052-z
    Kim, E. M., Woo, H. M., Tian, T., Yilmaz, S., Javidpour, P., Keasling, J. D., & Lee, T. S. (2017). Autonomous control of metabolic state by a quorum sensing (QS)-mediated regulator for bisabolene production in engineered E. coli. Metab Eng, 44(Supplement C), 325–336. https://doi.org/10.1016/j.ymben.2017.11.004
    Dossani, Z. Y., Apel, A. R., Middleton, H. S., Hillson, N. J., Deutch, S., Keasling, J. D., & Mukhopadhyay, A. (2017). A combinatorial approach to Synthetic Transcription Factor-Promoter combinations for yeast strain engineering. Yeast, n/a-n/a. https://doi.org/10.1002/yea.3292
    Kirby, J., Dietzel, K. L., Wichmann, G., Chan, R., Antipov, E., Moss, N., … Zhao, L. (2017). Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae. Metabolic Engineering. https://doi.org/10.1016/j.ymben.2016.10.017
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