Tools
Mascot
Mascot is a protein search engine used to identify proteins from shotgun proteomics experiments.
ProteinPilot
Easy to use ProteinPilot™ Software streamlines protein identification and quantitation, enabling you to identify hundreds of peptide modifications and non-tryptic cleavages simultaneously; easily distinguish protein isoforms, protein subsets, and suppress false positives; and visualize peptide-protein associations and relationships. With generic input for non-AB SCIEX instruments via .mgf format, the software is compatible with all proteomics MS/MS systems.
Scaffold
Scaffold 3 enables visualization of proteomic results and aids collaboration at JBEI. Scaffold 3 also uses statistical algorithms to validate protein identifications and detect false postives.
Synapseus - GenoLogics
Synapseus is a comprehensive and integrated laboratory asset, workflow, data management and integration platform for systems biology research. Synapseus transforms complex laboratory processes into a sophisticated end-to-end system, and enables efficient cross-science collection, organization, management, and information analysis. Synapseus provides researchers with an unparalleled solution to create new opportunities in systems biology research and discovery.
